Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41430 100 / 9e-28 LSR1, CID1, ERD15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) AT4G14270 69 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018018 [exp] 245 / 8e-85 AT2G41430 102 / 8e-29 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10031029 [exp] 169 / 5e-55 AT2G41430 115 / 3e-34 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10035419 [exp] 162 / 1e-52 AT2G41430 113 / 2e-33 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10019769 [exp] 89 / 6e-23 AT2G41430 91 / 1e-23 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10016358 [exp] 89 / 7e-23 AT2G41430 83 / 1e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10040964 [exp] 64 / 1e-13 AT2G41430 69 / 2e-15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10009847 [exp] 54 / 9e-10 AT2G41430 63 / 3e-13 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041600 [exp] 138 / 2e-42 AT2G41430 121 / 1e-35 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.006G044600 [exp] 135 / 2e-41 AT2G41430 122 / 3e-36 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.001G023100 [exp] 91 / 1e-23 AT4G14270 89 / 3e-23 unknown protein Potri.003G202500 [exp] 86 / 8e-22 AT2G41430 81 / 5e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.010G182800 [exp] 61 / 2e-12 AT4G14270 65 / 6e-14 unknown protein Potri.008G074600 [exp] 59 / 7e-12 AT4G14270 66 / 2e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10042014 pacid=23153967 polypeptide=Lus10042014 locus=Lus10042014.g ID=Lus10042014.BGIv1.0 annot-version=v1.0 ATGGCTTTGGTATCAGGAGGAAGGTCAACTCTAAACCCGGATGCACCGCCTTTCATTCCAGCAGCTTACAAGCAAGTAGCGGATTTCTCCCCAGAATGGT GGCAGCTGGTTACAACCACAACATGGTACAAAGACTACTGGATCAGCCAGCATCAAAACGAGGAAGGTCTCTACAACGATGCACAGGTTCAATATCATGA TGATGGTGATCTTGACAGCAAAGATATAGCCGGGTTGCTACCAGATACATTTGATCTTGATGTCGGGGCAGGGGTCAATTTCTCTGCTTTCGACGGTTTT GTTGAATCGTACGAATCCGAGTCAGAGAATAGAACAACACCTCAGACTGTACCCTCCTATGGAAATAGTTATTCTGGTTATGCAATTGGAGGAGGAGCTA TGGCTCCTCCGGCAGCAGCGGTAGTGAACCAAAGCTGA
AA sequence Show only first row Show all	>Lus10042014 pacid=23153967 polypeptide=Lus10042014 locus=Lus10042014.g ID=Lus10042014.BGIv1.0 annot-version=v1.0 MALVSGGRSTLNPDAPPFIPAAYKQVADFSPEWWQLVTTTTWYKDYWISQHQNEEGLYNDAQVQYHDDGDLDSKDIAGLLPDTFDLDVGAGVNFSAFDGF VESYESESENRTTPQTVPSYGNSYSGYAIGGGAMAPPAAAVVNQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	0	1
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	2.0	0.9240
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	2.4	0.9299
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	3.9	0.9199
AT5G11680			unknown protein		Lus10027000 [exp]	4.6	0.9155
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10028575 [exp]	5.8	0.9004
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	6.2	0.9094
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10018196 [exp]	6.4	0.8980
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	8.0	0.9202
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	9.5	0.9103
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	9.5	0.9136

Compare expression of checked genes

Lus10042014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.