Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32630 601 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 270 / 7e-81 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 265 / 3e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09820 249 / 2e-74 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G15630 247 / 2e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 245 / 8e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19290 245 / 1e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 238 / 1e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 234 / 3e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 234 / 7e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018019 [exp] 1145 / 0 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10007468 [exp] 276 / 2e-83 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 251 / 4e-73 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 245 / 2e-72 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 242 / 2e-70 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 244 / 5e-70 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 242 / 2e-69 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 241 / 5e-69 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 241 / 7e-69 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008900 [exp] 734 / 0 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 282 / 2e-85 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G276500 [exp] 273 / 5e-82 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 263 / 1e-79 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 263 / 2e-79 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 261 / 9e-79 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 261 / 1e-78 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 261 / 1e-78 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 261 / 1e-77 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 258 / 1e-77 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042016 pacid=23153934 polypeptide=Lus10042016 locus=Lus10042016.g ID=Lus10042016.BGIv1.0 annot-version=v1.0 ATGGCATCTCAAAGATTCTTACAAGCATACGGAAAAGGCATCCCATTTAGGCCCAGTTCAAGCTCAGCTGAGGAAATGGCCAAAATGGTCGTACAACAGC TGAAAAAATCAGATTTCAAAGGTCTTAATGCTGTGTCATCTTTGAACCCTACTCTCAATTCTGATGTCACCTGCTTGGTACTCTCGAACCCTGATGTTGA TCCTCGTTCTTGCTTGTCTTTCTTTAACTTTTTGCAAAGTAATGACCAGTCTACTGCTCAAAAACCTAATGCTGAAGCCACCATCATTCTCCTTCTGAGA TTATTCAAAGATAGGAAGTTTATGGCCATGAGGAATGTGCTGACGAGGATTGTGTTAGGTGATGCTAGGTTCGCAGTTTCTGAATTGATGCCATTGGTTA TTGCCAAATTTGATGAACCTGTTTTTGCTGAGAAGCTGTTTGATCTGCTGTTTAGAGTTTACGCTGATGCTAAGATGTTCGAAGAAGGTCTCGAAGTGTT TCGTTACATGATAGATAAAGGTTTGAAGGTTGACGAAAGATCTTGTATTGTGTATCTGGTTGCTTCAAAGAGATGTGATGAAATGGACATGTGTTTAGGC CTTTTCAGAAGAATGGTGAAGTCTAATGTGGAGATTACTGTTTACTCGTTGACCATTGTGATGGACGGCCTGTGTAGAAAAGGAAAGGTTACAAAAGCTA AAGAATTGATGATTGAAATGGGTGTGAAAGGAATTAAACCAAATGTGATTACCTATAATACCGTTTTAAATGGATATGTGAAAAGTAAGGATCTTGCTGG TGTGGAAGAGATCTTGAGACTGATGGATAAGGATGATGTTGCATACAATGCTGCTACATATACAATGTTGGTTAAATATCTTGGTGATAGTGGTAAGGCT GAGGAAGCTGAGAGGTTGTTCAAAGAAATGTGTGAAAGAAATGTCAAAGCAGATATTCATGTGTACACATCCATGATCAGTTGCAGTTGTAAAGTTGGGA ACATGAGAAGAGCTTTTGCTTTGTTTGATGAGCTCAGCGAGAAAGGCCTTGCTCCGAATTCTCACACTTATGGGGCCTTGATTGATGGTGTCTGTAAGGC TGGCCAGATGGAAGCAGCTACGATGTTGTTATCTAAGATGCAATCCGAAGGGTTAGATATTGATCATCGAATAATTAACTCACTGATTGATGGTTATTGT AAATTAGGCATGATGGAAGAGGCTCTAAGAGTAAACGATACAATGGAAAAGAAAGGTTTCAAGGCAGATAACTATACGCATAACATAATTGCTAGTGGAT TCTGTAAAGCAAACAAACTCAAGGAAGCAAAGAGCTGGTTGTTTGGAATGATCGAAAAGGGCGGAACACCTAATCCAGTGAATTTCACCACTTTGATTAG CATCTACTGCAAAGAAGGGAATATCCTAGAAGCAAAGAAGCTATTTCAAGATATGAAAAAGAAATCGGTGAGGCCTACCCTTATTACTTACAATGCTATG ACTGATGGATTTTGTAAGCAAGGCAAGATTTCTGAAGCTTACAAGCTAAAGGATGAAATGGTTGATAAGGGGATTCTGCCTGACATATACACATATACAT CTCTTATTAATGGGGAGTGTATTGCTGGGAATGTGGATGAAGCATTGAAACTGTTCAATGAAACTCGTGAAAGTGGACTGACAATCAACATAGTCACTTA CACCGCAATAATTTCTGGCCTGTCAAAGGAGGGGCGATCTGAAGAAGCGTTTGAATTGTATGATGAGGCTATGGTGGCTGGCCTGATTCCTGATGACAGA TTGTATGCATTACTTGTTGGCAGCCTTCACAAAAGTTAG
AA sequence Show only first row Show all	>Lus10042016 pacid=23153934 polypeptide=Lus10042016 locus=Lus10042016.g ID=Lus10042016.BGIv1.0 annot-version=v1.0 MASQRFLQAYGKGIPFRPSSSSAEEMAKMVVQQLKKSDFKGLNAVSSLNPTLNSDVTCLVLSNPDVDPRSCLSFFNFLQSNDQSTAQKPNAEATIILLLR LFKDRKFMAMRNVLTRIVLGDARFAVSELMPLVIAKFDEPVFAEKLFDLLFRVYADAKMFEEGLEVFRYMIDKGLKVDERSCIVYLVASKRCDEMDMCLG LFRRMVKSNVEITVYSLTIVMDGLCRKGKVTKAKELMIEMGVKGIKPNVITYNTVLNGYVKSKDLAGVEEILRLMDKDDVAYNAATYTMLVKYLGDSGKA EEAERLFKEMCERNVKADIHVYTSMISCSCKVGNMRRAFALFDELSEKGLAPNSHTYGALIDGVCKAGQMEAATMLLSKMQSEGLDIDHRIINSLIDGYC KLGMMEEALRVNDTMEKKGFKADNYTHNIIASGFCKANKLKEAKSWLFGMIEKGGTPNPVNFTTLISIYCKEGNILEAKKLFQDMKKKSVRPTLITYNAM TDGFCKQGKISEAYKLKDEMVDKGILPDIYTYTSLINGECIAGNVDEALKLFNETRESGLTINIVTYTAIISGLSKEGRSEEAFELYDEAMVAGLIPDDR LYALLVGSLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	0	1
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10014697 [exp]	2.0	0.8867
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	3.5	0.8748
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	5.3	0.8524
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	5.7	0.8617
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10016125 [exp]	9.5	0.8525
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	13.5	0.8678
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	19.1	0.8401
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10035510 [exp]	19.1	0.7841
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	21.2	0.8488
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	21.8	0.8244

Compare expression of checked genes

Lus10042016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.