Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41130 205 / 1e-65 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 197 / 8e-63 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 148 / 2e-42 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G40200 124 / 2e-34 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 124 / 2e-33 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT4G38070 84 / 4e-18 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 58 / 2e-09 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 56 / 1e-08 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G28790 54 / 2e-08 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G28815 52 / 1e-07 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018020 [exp] 422 / 1e-150 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 135 / 9e-38 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 134 / 2e-37 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10007502 [exp] 128 / 4e-36 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 131 / 1e-35 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 131 / 1e-35 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 115 / 2e-31 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 107 / 2e-27 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 102 / 8e-26 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037100 [exp] 255 / 1e-85 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 253 / 1e-84 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 145 / 3e-41 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 137 / 3e-38 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 125 / 2e-34 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 122 / 1e-33 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 119 / 3e-32 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 118 / 6e-32 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G105300 [exp] 114 / 3e-30 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 110 / 1e-28 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042017 pacid=23154015 polypeptide=Lus10042017 locus=Lus10042017.g ID=Lus10042017.BGIv1.0 annot-version=v1.0 ATGGCATCACAAGTAAAAAGTTATTTGTTCCGTTTGCTTGCTGCGGAGAACGGATCAGCCTTCCAACAACATCCTCTACAAACCAGCAGCAGCTTCATCG GCAACAACAACAGTACTTGTATTGATAGTCAAGCTTCTTCTTCTTGTGATTATAGTAATGATCACCAGTACTATCATCATCATCATCATCATCAGTTATC AGCTGGGAGTGGTTCTGCGATCACTGCGGGAGAAAATTCGAGGACGACGACACCTCAGGATAGAGCGTACGCAGCACTGCAGAATCACAAGGAAGCTGAG AAGAGAAGGAGGGAGAGGATCAATTCTCATCTCGACAAGCTCCGAGCTCTCCTTCCTTGCAACTCCAAGACGGATAAAGCATCACTACTGGCGAAGGTGG TGGAGAGAGTGAAAGAGCTGCGACAGCAGACCTCCGAGATCCACGGACTCGACACCTTCCCGTCGGAGCTCGACGAGATCACGGTGGCGGAGGAATACGG CGGCGGCGGGAGGAATAATAATATGGTGTACAGGGCATCGGTGTGCTGCGAGGACAGGTCGGAACTGCTGCCGGAGTTGATAGAGATATTTAAGGCCCTC CACCTCAAGACTGTCAGGGCCGAGATGGTGACGCTGGGCGGAAGGACACGTAGCGTCCTCATGGTGGCGCCGGCGGAAGATCATGCCGGCGTTGAGTCCA TTCATTTCCTGCAGGCTGCGCTCAAGTCTTTGCTGGAGCGTAGTAATATATCCGGCGGTGGTACTAATGAGCCCTCTAAGAGGAGGAGGCTCTTGAAATC TTGA
AA sequence Show only first row Show all	>Lus10042017 pacid=23154015 polypeptide=Lus10042017 locus=Lus10042017.g ID=Lus10042017.BGIv1.0 annot-version=v1.0 MASQVKSYLFRLLAAENGSAFQQHPLQTSSSFIGNNNSTCIDSQASSSCDYSNDHQYYHHHHHHQLSAGSGSAITAGENSRTTTPQDRAYAALQNHKEAE KRRRERINSHLDKLRALLPCNSKTDKASLLAKVVERVKELRQQTSEIHGLDTFPSELDEITVAEEYGGGGRNNNMVYRASVCCEDRSELLPELIEIFKAL HLKTVRAEMVTLGGRTRSVLMVAPAEDHAGVESIHFLQAALKSLLERSNISGGGTNEPSKRRRLLKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	0	1
					Lus10013172 [exp]	2.4	0.7687
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	3.6	0.8128
					Lus10034724 [exp]	8.5	0.7607
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10021331 [exp]	12.3	0.6397
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	12.5	0.7237
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	14.7	0.7425
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	15.0	0.6889
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	22.2	0.7106
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	29.1	0.7498
AT3G09550			Ankyrin repeat family protein ...		Lus10003986 [exp]	31.7	0.6434

Compare expression of checked genes

Lus10042017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.