Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57080 239 / 4e-80 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT2G41340 223 / 9e-74 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G54490 167 / 7e-52 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G22320 98 / 3e-25 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 74 / 4e-16 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT3G16680 44 / 6e-06 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018022 [exp] 434 / 4e-157 AT3G57080 280 / 6e-96 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10024169 [exp] 172 / 1e-53 AT3G54490 221 / 7e-73 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10039554 [exp] 150 / 1e-44 AT3G54490 184 / 6e-58 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10013639 [exp] 102 / 6e-27 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10001335 [exp] 102 / 6e-27 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038500 [exp] 293 / 2e-101 AT3G57080 286 / 1e-98 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.001G025500 [exp] 206 / 4e-67 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.006G161600 [exp] 102 / 1e-26 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.003G200450 [exp] 90 / 5e-23 AT3G54490 92 / 4e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.T127006 [exp] 87 / 6e-22 AT3G54490 92 / 5e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.001G179300 [exp] 72 / 4e-16 AT3G54490 92 / 6e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [flax] [poplar] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [flax] [poplar] PDDEXK PF03871 [flax] [poplar] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042019 pacid=23153826 polypeptide=Lus10042019 locus=Lus10042019.g ID=Lus10042019.BGIv1.0 annot-version=v1.0 ATGGAACAGAATGGCGCGGCGGCGACGAACGGGGATGTTGAAGGAGGCGGCGAGACGGCCGCCTTTCAAATGGACGGAATGAAGAAGTGCTTGAGCAGCT ACATCGACGACGGCAGCCCCGAGACTCACAGGTACTTCTTGGCTCGGAGAACAGTACTGGAGATGTTGAAAGACAGGGGCTACTACGTCCCTGCATCCGA CATCTCCGTCTCCTTGCAAGAGTTCCGCTCCATTCATGACCAGAACATCGATGTAGACCGCCTCAAGTTCTCCGCCACTCACCAGACTGATCCTTCCAAT ACGATGATGGTCATATTTGGTGGAACTGGCGTGATTAAAGTTAATACGGTTCGTCTAATCGCTGCTCAGATTGTTAATAGAGACAGCTTAACTGGGCTGA TAATGATCTTGCAAAACCAAGTAACGAAACAAGCCGAGAAAGCACTCAGGCTTTTCTCATTCAAGGTTGAGATATTTCAGATTACGGACTTGCTTGTCAA CATCACTAAGCATGTGCTGAAGCCGAGGCATCAGGTGCTGACCGAAGAGGAGAAAAAACAGCTCTTAATAAAGTACAATGTAGTAGACAAACAGGGGCAA GTGGTTAAGGTGACATACACGGGTGAAATCACTGAGTCTCATGTCTCATACAGATGCGTCTGGTAA
AA sequence Show only first row Show all	>Lus10042019 pacid=23153826 polypeptide=Lus10042019 locus=Lus10042019.g ID=Lus10042019.BGIv1.0 annot-version=v1.0 MEQNGAAATNGDVEGGGETAAFQMDGMKKCLSSYIDDGSPETHRYFLARRTVLEMLKDRGYYVPASDISVSLQEFRSIHDQNIDVDRLKFSATHQTDPSN TMMVIFGGTGVIKVNTVRLIAAQIVNRDSLTGLIMILQNQVTKQAEKALRLFSFKVEIFQITDLLVNITKHVLKPRHQVLTEEEKKQLLIKYNVVDKQGQ VVKVTYTGEITESHVSYRCVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	0	1
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	4.9	0.6237
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10003796 [exp]	19.4	0.5770
AT5G50350			unknown protein		Lus10034861 [exp]	48.2	0.5636
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	51.0	0.5503
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10003078 [exp]	56.5	0.5748
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	63.8	0.5397
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	72.0	0.5442
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10021204 [exp]	78.7	0.5306
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	109.8	0.5033
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	137.0	0.5186

Compare expression of checked genes

Lus10042019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.