Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72890 127 / 4e-32 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G72950 122 / 2e-30 Disease resistance protein (TIR-NBS class) (.1) AT5G36930 122 / 3e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72910 115 / 4e-28 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT4G12010 116 / 2e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72930 104 / 2e-26 TIR toll/interleukin-1 receptor-like (.1.2) AT5G48770 113 / 3e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 113 / 4e-26 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72900 109 / 5e-26 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT3G44400 112 / 7e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006928 [exp] 337 / 9e-110 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019142 [exp] 227 / 2e-68 AT1G72890 140 / 1e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10006929 [exp] 210 / 1e-64 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10018024 [exp] 213 / 5e-63 AT5G18350 108 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10014671 [exp] 196 / 3e-59 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026845 [exp] 139 / 2e-37 AT5G36930 145 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004727 [exp] 140 / 5e-37 AT1G27180 182 / 2e-53 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005827 [exp] 132 / 1e-36 AT5G36930 95 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10027920 [exp] 137 / 3e-36 AT5G36930 139 / 3e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G046000 [exp] 154 / 1e-40 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G084333 [exp] 150 / 5e-40 AT5G36930 347 / 2e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 153 / 2e-39 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 150 / 9e-39 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 149 / 3e-38 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 146 / 4e-38 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068200 [exp] 148 / 8e-38 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001600 [exp] 147 / 1e-37 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 147 / 1e-37 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 147 / 1e-37 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10042020 pacid=23153612 polypeptide=Lus10042020 locus=Lus10042020.g ID=Lus10042020.BGIv1.0 annot-version=v1.0 ATGACCACCACCGCCACGACCCGGTCGCCACCGCAGCCCCCGCCCCTACCGGCTCTCGCCAAGTACGATGTCTTCCTCAGCTTCAGAGGCGACGACCTCC GGGGAAAGTTCGTGGACCACCTTTATACAAAGCTCCAGAGTCTGAAAGTCAACACTTTCATGGACGACAAGAATCTGAAGAAGGGTGAGCTGATCAAGAA CATAACAAAGGCAATCGAAGGGTCCAAGATCTACGTGGTGCTCTTCTCCTCCGGGTACGCAGACTCCGACTGGTGCCTCAATGAACTGGCCAAGATCTCT AACTTAGTCAAGAAGAAGGGCGCACTCCACCTGGCCATACCGGTCTTCTTCCACGTGTCGCCGGACGATGTGGCCGACCAGTCCGGGGTTTTCGAGGAGG CGTTTAAGCGCCACGGCTCCGTATTCTCGTCGCGGAAAGTCAACGGTTGGAAGAAGGCCTTGGCTACTTTGGCGACAACCACCGGCTGGCCTTTCGACGG AAAACAATCGGAGGTGAAATTAGTAGAAGACATAAGCATGGACGTGGTACGAAGGCTCAGCGATTTCAACGGTGAAACAAAATCAATAGTCAAAGTCAAA CCCCTCCCCGTGGAGGAATATAACTTATTCTCATATCAAGAGCTAGAAAACACCGCCATGATCAGAATCTGCGCAATGGGCGGTCTAGAAAGCATCAAGT CAGCAAAACTCGTCTACGACAACATCCCTGCAAGCAGTACTGGATCCATCCTGTCGTATAGCCTGAAAAACCCACGGTTCGAACCCAAGCCAACACTCAA CCCGGTTGAACCGGCAATGAAATGGATAAAAAACACGTGGGATGAGGACGGGGAAGTCATCAACGCGGTACGTTCGAGCAGAAAGAAGGTCGTGGTCATG GTCGACAACGTACATAAGCTAGAGAATCTACTGCAAGTTGCTGCTGGATTGGGTTGGTTCGGCTCGGGTAGCCGGATCGTTGTCTCGGCCGTGGATGTTT CTATGAAGGTTCTGAAAGTTATCCGCGGTCAGTGGCAGGCGCCGGGAGGCCGAAACAATGACAATAATAATGATAATAATCTAGACGTTGCTTGCTTCAT GAATGAGATGATGGATGGTCGAGATTTGATGAGGCGGCTGAGAGATTCTCTGGCTAGTGGTGGCTTGGTGGATGAGTCCGTTTGGAGGATTCGTATCGAA AAATACGACGGCGTTGGTATGGTGGAGAATGGGAAACTTGAAATTATAAAAGCGGAGCTTCCACTATTTACGGAAATGAGTAAGCAAGTAATGAAGGGTG TGTTTGAGAAAAAATGGATAATACTGAAGAGTTTCTTCGTGGTGTTCGTTGCTTCCATGGTTGCTTATAGAGTGAGGTCGAGCAAGCGGCGGATAACTCG TTTGATTAACGAATTTGCGTCCAAGTATTTCACCAAGGCGTGGAGATCTGACAGACTACTTCCAACCAAAATGAAAAAAGAATAG
AA sequence Show only first row Show all	>Lus10042020 pacid=23153612 polypeptide=Lus10042020 locus=Lus10042020.g ID=Lus10042020.BGIv1.0 annot-version=v1.0 MTTTATTRSPPQPPPLPALAKYDVFLSFRGDDLRGKFVDHLYTKLQSLKVNTFMDDKNLKKGELIKNITKAIEGSKIYVVLFSSGYADSDWCLNELAKIS NLVKKKGALHLAIPVFFHVSPDDVADQSGVFEEAFKRHGSVFSSRKVNGWKKALATLATTTGWPFDGKQSEVKLVEDISMDVVRRLSDFNGETKSIVKVK PLPVEEYNLFSYQELENTAMIRICAMGGLESIKSAKLVYDNIPASSTGSILSYSLKNPRFEPKPTLNPVEPAMKWIKNTWDEDGEVINAVRSSRKKVVVM VDNVHKLENLLQVAAGLGWFGSGSRIVVSAVDVSMKVLKVIRGQWQAPGGRNNDNNNDNNLDVACFMNEMMDGRDLMRRLRDSLASGGLVDESVWRIRIE KYDGVGMVENGKLEIIKAELPLFTEMSKQVMKGVFEKKWIILKSFFVVFVASMVAYRVRSSKRRITRLINEFASKYFTKAWRSDRLLPTKMKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	0	1
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	1.0	0.9866
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	1.4	0.9785
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	1.7	0.9768
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	2.8	0.9672
AT4G39900			unknown protein		Lus10024045 [exp]	2.8	0.9618
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	3.2	0.9668
AT1G49230			RING/U-box superfamily protein...		Lus10020859 [exp]	3.6	0.9583
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	4.2	0.9642
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	5.3	0.9626
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020673 [exp]	5.5	0.9572

Compare expression of checked genes

Lus10042020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.