Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57070 152 / 2e-42 Glutaredoxin family protein (.1) AT5G13810 137 / 4e-38 Glutaredoxin family protein (.1) AT2G41330 137 / 6e-37 Glutaredoxin family protein (.1) AT5G39865 119 / 4e-30 Glutaredoxin family protein (.1) AT3G28850 116 / 7e-29 Glutaredoxin family protein (.1) AT5G58530 110 / 5e-28 Glutaredoxin family protein (.1) AT1G32760 95 / 5e-22 Glutaredoxin family protein (.1) AT4G10630 95 / 6e-22 Glutaredoxin family protein (.1) AT5G06470 90 / 1e-20 Glutaredoxin family protein (.1) AT5G03870 91 / 3e-20 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018025 [exp] 495 / 3e-176 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10039537 [exp] 139 / 2e-38 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 139 / 2e-38 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10001669 [exp] 118 / 4e-30 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10013597 [exp] 108 / 8e-28 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 102 / 1e-25 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10007256 [exp] 106 / 2e-25 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10040949 [exp] 102 / 2e-25 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10008270 [exp] 104 / 4e-25 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041800 [exp] 236 / 1e-74 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 225 / 4e-70 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 138 / 2e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 138 / 2e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 130 / 2e-35 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 122 / 2e-32 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 118 / 4e-31 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 110 / 1e-27 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 109 / 2e-26 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 106 / 3e-26 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10042021 pacid=23153556 polypeptide=Lus10042021 locus=Lus10042021.g ID=Lus10042021.BGIv1.0 annot-version=v1.0 ATGGGTTGCTCTGTTTCCAGATTCACCATTTTCTCCGCATTCCATTCCCACCCTCTTCTTAATCCACCGCCGTCTCTCATCCTCCGCCACCATGCCTCCT CCACTACTACTAATACTACTACTACTCCACAATCCCACCACTCCTCTTCTCCTCCTCCTCCTCCTGGTAAAAGCCACCGCCGAGCTATGTCTATCCCATC CCCTCTCGTCCACCATCCTCCCTCCGGCAATGGAGATTCCGACCACCTTGTCTTCTTAACCTCCACCTCCTACGGCTCCGACCTCCACAAAACCGACCAA CAACAACACTACCACCACTCACCTGACTCCGCCCTTTCCCCTGACTCCGTCATCAACGCTTGGGAGCTCATGGATGGTCTCGACGACGATTCCAATTCCG ACTTGGCTCATTCTCCTCTGCCGACAAAATGTCCTTCGCAAAATCAGGGCTCCGCCGCCGAAAACGAAAAACCTAATTCCGAATCGAAGCCGCTGTGGAA GCATTTCTCCGAGGAGTCATTTCTCCTGAAATTGGACCCGGTAATAGTCTCCAGCTACCGCCGCGCATTGTGCGCTAGGCAATTGCGAGTCCAAACCAAG GAATCACTGCAATTATCCACCGAATCCAAGGAGGAAACACCCGATCGCCACTCGCCTGCGGCGGGCGCCTGCCGGCGCCGCCTGCGGCGCTGCTCGGTCC GAGCAATACTCCGGGGGCTCCGGGTGGCGGTCGACGAGAGGGACGTGTCGATGCACTGGGCCTACGGGAAAGAACTGCGGGGGTTGTTGTCACCGGAGAC TGCGGCGGGAGGAGGAGGGAGACTGCCACAGGTGTTCATCGGTGGGAGGCACGTGGGAGGGGCGGATGAGATCCGGCGTATGAACGATTCCGGGGAGCTG TCGGAGCTGGTGAAGGGGTTTCCCAGCTGCGGAGGGGTGTGCGGTAGTTGCGGGGATGCGAGATTTGTGATGTGCTGTAACTGTAACGGGAGCAGGAAGG TGTTTGATGAAAAGGAGGAAAGGCTGCGGCGGTGCCCCGATTGCAATGAGAATGGGTTGATTCGGTGCCGGAGCTGCTCTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10042021 pacid=23153556 polypeptide=Lus10042021 locus=Lus10042021.g ID=Lus10042021.BGIv1.0 annot-version=v1.0 MGCSVSRFTIFSAFHSHPLLNPPPSLILRHHASSTTTNTTTTPQSHHSSSPPPPPGKSHRRAMSIPSPLVHHPPSGNGDSDHLVFLTSTSYGSDLHKTDQ QQHYHHSPDSALSPDSVINAWELMDGLDDDSNSDLAHSPLPTKCPSQNQGSAAENEKPNSESKPLWKHFSEESFLLKLDPVIVSSYRRALCARQLRVQTK ESLQLSTESKEETPDRHSPAAGACRRRLRRCSVRAILRGLRVAVDERDVSMHWAYGKELRGLLSPETAAGGGGRLPQVFIGGRHVGGADEIRRMNDSGEL SELVKGFPSCGGVCGSCGDARFVMCCNCNGSRKVFDEKEERLRRCPDCNENGLIRCRSCSFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	0	1
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	1.7	0.9354
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	3.9	0.9078
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	4.6	0.8880
AT2G25270			unknown protein		Lus10001945 [exp]	4.7	0.9100
AT1G11120			unknown protein		Lus10018564 [exp]	6.9	0.8945
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	7.4	0.8932
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	7.7	0.8588
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	8.4	0.8770
AT2G39870			unknown protein		Lus10040247 [exp]	11.0	0.8905
AT2G39870			unknown protein		Lus10004675 [exp]	11.4	0.8808

Compare expression of checked genes

Lus10042021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.