Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14965 337 / 8e-118 ATMAPR4 membrane-associated progesterone binding protein 4 (.1) AT2G24940 76 / 1e-17 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT3G48890 65 / 3e-12 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 60 / 6e-11 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018026 [exp] 453 / 2e-163 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10002241 [exp] 72 / 3e-16 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10038356 [exp] 73 / 1e-15 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10029567 [exp] 73 / 1e-14 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10027449 [exp] 64 / 1e-11 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 63 / 1e-11 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 59 / 2e-10 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 59 / 3e-10 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10034799 [exp] 50 / 2e-08 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022700 [exp] 355 / 8e-125 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1) Potri.006G023801 [exp] 119 / 3e-34 AT4G14965 119 / 4e-35 membrane-associated progesterone binding protein 4 (.1) Potri.018G016900 [exp] 71 / 2e-15 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.015G125100 [exp] 71 / 7e-15 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.006G266200 [exp] 64 / 3e-13 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.012G137800 [exp] 66 / 1e-12 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 64 / 6e-12 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042022 pacid=23153761 polypeptide=Lus10042022 locus=Lus10042022.g ID=Lus10042022.BGIv1.0 annot-version=v1.0 ATGTGGAAGGTAGCGAGGGGAGCATTGCGATCCCCATTCATTGGGATAGCTATTCTCGTTACCTTAACTGCTGCTTTCTTCTTCAAGTTCAATTATTTTC ATCTGCATCAGCAACCCAAGAGACTGTTCACTACGCAGGAGCTTGCTCCGTGTAACGGCACTGATGATTCATTGCCTATACTGCTCGGTATCCTCGGATC GGTGTTCGATGTAACCAAAGGGAAATCTCATTATGGTGTTGGAGGGAGCTACAATCATTTTGCTGGAAGATTGTATATTGACTCCTTTTCTTCTTGTGTT AATCACAAGCATAGAGATGCTTCCCGCGCATTTGTTTCAGGGAACTTTACAGGAGATGGGTTGACAGACTCATTGCGTGGCTTGTCCACGACTGAGGTCA AGGGTATCGTTGAATGGCGGGACTTCTATATTCGAACATACATATTTGTAGGGAAGCTAGTTGGTCGTTACTACGACGAGCATGGAAATCCAACAAAAAC ACTGAAAGGTGTTGAAGCAAAGGCTGCAAGAGGAAAGCAGCTTGTGGAGAAGCAGAAAAAAGAAGAAGCAAAACAGGCGAGTTGCAACTCAAGATGGAGT CAAGATGAGGGTGGGGAGGTGTGGTGTGATGTCGGGTATCCGAGATTAGTACAGCGACCATTGGAGATTGCTTTGACTGGGAAGATGAGCAAGCGATGTG CATGCTTTGAAGAAGACGAATTGGAGCAGACTGGTCTTGAAGTTTATCAAGGCTGTGATCATCTTGCCCAAAGGTGCCAAGTCTAA
AA sequence Show only first row Show all	>Lus10042022 pacid=23153761 polypeptide=Lus10042022 locus=Lus10042022.g ID=Lus10042022.BGIv1.0 annot-version=v1.0 MWKVARGALRSPFIGIAILVTLTAAFFFKFNYFHLHQQPKRLFTTQELAPCNGTDDSLPILLGILGSVFDVTKGKSHYGVGGSYNHFAGRLYIDSFSSCV NHKHRDASRAFVSGNFTGDGLTDSLRGLSTTEVKGIVEWRDFYIRTYIFVGKLVGRYYDEHGNPTKTLKGVEAKAARGKQLVEKQKKEEAKQASCNSRWS QDEGGEVWCDVGYPRLVQRPLEIALTGKMSKRCACFEEDELEQTGLEVYQGCDHLAQRCQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	0	1
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	1.0	0.9091
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	2.6	0.8792
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	3.2	0.8955
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	3.5	0.8884
AT1G71430			unknown protein		Lus10007091 [exp]	3.7	0.8654
AT5G64180			unknown protein		Lus10013157 [exp]	4.5	0.8543
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	6.9	0.8836
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	7.3	0.8741
AT1G22140			unknown protein		Lus10025627 [exp]	8.1	0.8723
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	8.5	0.8822

Compare expression of checked genes

Lus10042022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.