Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 74 / 2e-14 IQD19 IQ-domain 19 (.1) AT3G16490 73 / 4e-14 IQD26 IQ-domain 26 (.1) AT5G07240 73 / 5e-14 IQD24 IQ-domain 24 (.1) AT5G13460 66 / 1e-11 IQD11 IQ-domain 11 (.1) AT5G03960 65 / 2e-11 IQD12 IQ-domain 12 (.1) AT3G49380 64 / 2e-11 IQD15 IQ-domain 15 (.1) AT1G01110 65 / 3e-11 IQD18 IQ-domain 18 (.1.2) AT4G10640 64 / 4e-11 IQD16 IQ-domain 16 (.1) AT2G26180 64 / 5e-11 IQD6 IQ-domain 6 (.1) AT4G00820 64 / 6e-11 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018029 [exp] 420 / 1e-146 AT5G03960 114 / 2e-28 IQ-domain 12 (.1) Lus10042027 [exp] 286 / 2e-93 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10018031 [exp] 211 / 3e-65 AT5G03960 119 / 3e-30 IQ-domain 12 (.1) Lus10041188 [exp] 69 / 2e-12 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10021904 [exp] 68 / 2e-12 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10023233 [exp] 67 / 4e-12 AT4G00820 126 / 1e-33 IQ-domain 17 (.1) Lus10012608 [exp] 65 / 4e-11 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 64 / 5e-11 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10005315 [exp] 64 / 8e-11 AT5G13460 235 / 7e-73 IQ-domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 80 / 2e-16 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.005G051500 [exp] 79 / 6e-16 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.013G038901 [exp] 77 / 1e-15 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.016G042700 [exp] 77 / 2e-15 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.001G021000 [exp] 68 / 3e-12 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.002G178500 [exp] 68 / 3e-12 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 66 / 1e-11 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.012G016200 [exp] 66 / 1e-11 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.010G082600 [exp] 66 / 2e-11 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.015G012500 [exp] 65 / 2e-11 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10042025 pacid=23153840 polypeptide=Lus10042025 locus=Lus10042025.g ID=Lus10042025.BGIv1.0 annot-version=v1.0 ATGGCGAACAACAACAACAAAGGCAGCTCCTTGTTTGGTTGGGTGAAGAAAATCTTCACCTCCAAACTTTCCGAAAAGAAATTGAAGGGCGGGAAATCTC AACGGATTTCTAGGAGGCTGAGACTTCGACAACAACACCACGAAGCAGTTCTGCCCCCAACGACTACGACAACAAACAGACAAATCACACAAGCAAGAGA ACGACAAAAGAAGTACGCTCTCACCGTCGCCACGGCCACCGCCGCCGCCGCCGAGGCTGCCGTCTTAGCTGCCAAAGCCGCCGCTGAGCTTGTCCACATC ACCGCTTCTTTTCAGCACCATCATTTCCCTAAACCGGACCGTAATTGGACCGCCGCTGCCATTTTGATCCAGAGTGTTTTTCGTGGTCACCTTGCCAGGA AAGCCTTACGAGCACTGAAGGGTGTGGTGAAGCTTCAAGCTATTGTTCGTGGCCAGTCTGTCCGACGCCAATTTGCCATTGTCAAATTCGAGCATTTGAC AATGCTGAAAGCCAAGCATAAGAATGCCGAATCAATCAATTCGGAAAGGAGGAACACACGAACACTGCAGGAAGAACTAGTGCTAGAGAATGAGGGAAGT GGTAAGAATGGTCTCAGTTCGATAGACAACTCAAGGCTAGTTCCTATGTCCACCACATCGTTCAATGGTGAATTAACAAGGAATCAAACAAGGGAACTCC GTAGAGATTTTGTTAATGCTGTTGATGATGATGGTAACAATTGCAGTTCGGCTTCGATTTCATACGCACGAAGGTCATTTGGCCATGCTCATCTAGGGGC GAGTAGCTCGATTGAGAATTCAGTCCCATTTAGTAGGTCACCGGCTTTGCCAACTTACATGGCCGCAACACAATCATCGAAAGCAAGAACAAGATCGCTG AGCACACCGCGACATAGCCTAGACGGGATCCCGACCAAAGGTGGAATAATGCAATCTCTTTGGTCTTCTGATCATCATGGAGAACTAGAAGTGTTTAGCT GTAATGCTGCTGCTGGAAAATCTTCATGTGGTCAGGAACTGCAATTCCTGAACAGAAAGGTTCATCACCGTAGATTCAGCCATGGATTCTGA
AA sequence Show only first row Show all	>Lus10042025 pacid=23153840 polypeptide=Lus10042025 locus=Lus10042025.g ID=Lus10042025.BGIv1.0 annot-version=v1.0 MANNNNKGSSLFGWVKKIFTSKLSEKKLKGGKSQRISRRLRLRQQHHEAVLPPTTTTTNRQITQARERQKKYALTVATATAAAAEAAVLAAKAAAELVHI TASFQHHHFPKPDRNWTAAAILIQSVFRGHLARKALRALKGVVKLQAIVRGQSVRRQFAIVKFEHLTMLKAKHKNAESINSERRNTRTLQEELVLENEGS GKNGLSSIDNSRLVPMSTTSFNGELTRNQTRELRRDFVNAVDDDGNNCSSASISYARRSFGHAHLGASSSIENSVPFSRSPALPTYMAATQSSKARTRSL STPRHSLDGIPTKGGIMQSLWSSDHHGELEVFSCNAAAGKSSCGQELQFLNRKVHHRRFSHGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	0	1
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	2.0	0.9057
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	4.5	0.8741
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	6.6	0.8821
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	9.3	0.7918
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	10.5	0.8757
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10042531 [exp]	12.2	0.8163
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	12.7	0.8331
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	17.1	0.8419
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	17.3	0.8606
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	23.1	0.8182

Compare expression of checked genes

Lus10042025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.