Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10150 150 / 1e-43 ATPAP16, PAP16 purple acid phosphatase 16 (.1) AT5G57140 42 / 0.0002 ATPAP28, PAP28 purple acid phosphatase 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018030 [exp] 244 / 8e-80 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1) Lus10031039 [exp] 146 / 8e-42 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1) Lus10005170 [exp] 69 / 6e-15 AT3G10150 59 / 3e-11 purple acid phosphatase 16 (.1) Lus10022947 [exp] 40 / 0.0007 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10027596 [exp] 40 / 0.0007 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042500 [exp] 168 / 2e-50 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1) Potri.006G074500 [exp] 41 / 0.0004 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1) Potri.006G074300 [exp] 40 / 0.0006 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042026 pacid=23153583 polypeptide=Lus10042026 locus=Lus10042026.g ID=Lus10042026.BGIv1.0 annot-version=v1.0 ATGGGACTACGCCCATTTCATCTACCCATCTCGCTCGGTTTCGTCCTCCTCCTCTGCTTCACCAGCAGCAGGAGCACCGGGAGGGCAGACTCACCGGTCA TCGAGCTCAAACTGAAGGAGCAGCAGCGGCATCAACTCCACAGCGTAGCTGGTGAGGTTCTTCAGATGCGACGTGGGGCGCCTTTCAAGATTGCGATTTT TGCAGACTTGCATTTTGGGGAAGATGGCTGGACTGACTGGGGCCCCCTGCAAGACGCCAACTCTATCCTAGTCATGTCCAACGTACTGGACACTGAAAAC CCAGCCAACAATATCCCAGTTGCTAATGCTAGCTTGTATTGGGGCCAGGCAACATCTCCAACCAGGGATAGGGGCATTCCATGGGCTAGTGCGTTTGGAA ACCATGACGATATGCCATTTCAGTGGCCGATTGAGTGGTTTTCAAATCCAGGAATTCCCGAGGGCACAACCACGGACTGGATTGGTGCTGCCCTCATGAG GGAAAGGGAAAACTATGGATGTGCTATGCTAGGCATACCGGCTACGGTGGATATGGGAGCTGGGATAGAGGATCCAGATTACTGTAGGTTACAGAGGAGC CTTTCTCTCAAGCCATGGATAAGAATGGAGGATGGGGAAGTGCACAGTGAAGTTGTTCTGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10042026 pacid=23153583 polypeptide=Lus10042026 locus=Lus10042026.g ID=Lus10042026.BGIv1.0 annot-version=v1.0 MGLRPFHLPISLGFVLLLCFTSSRSTGRADSPVIELKLKEQQRHQLHSVAGEVLQMRRGAPFKIAIFADLHFGEDGWTDWGPLQDANSILVMSNVLDTEN PANNIPVANASLYWGQATSPTRDRGIPWASAFGNHDDMPFQWPIEWFSNPGIPEGTTTDWIGAALMRERENYGCAMLGIPATVDMGAGIEDPDYCRLQRS LSLKPWIRMEDGEVHSEVVLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	0	1
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	7.3	0.9071
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	9.8	0.9163
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	11.5	0.9070
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	12.7	0.8838
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	13.0	0.8994
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	14.4	0.8902
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	15.7	0.8956
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	16.2	0.8855
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	17.5	0.8986
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10001592 [exp]	20.3	0.8887

Compare expression of checked genes

Lus10042026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.