Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03960 112 / 3e-27 IQD12 IQ-domain 12 (.1) AT1G76705 57 / 1e-09 calmodulin binding (.1) AT3G49380 44 / 0.0002 IQD15 IQ-domain 15 (.1) AT5G13460 44 / 0.0002 IQD11 IQ-domain 11 (.1) AT1G51960 42 / 0.0005 IQD27 IQ-domain 27 (.1) AT3G59690 42 / 0.0006 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018031 [exp] 475 / 1e-167 AT5G03960 119 / 3e-30 IQ-domain 12 (.1) Lus10042025 [exp] 310 / 9e-103 AT5G03960 80 / 2e-16 IQ-domain 12 (.1) Lus10018029 [exp] 293 / 9e-96 AT5G03960 114 / 2e-28 IQ-domain 12 (.1) Lus10013522 [exp] 44 / 0.0003 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 132 / 6e-34 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 81 / 2e-16 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.001G021000 [exp] 49 / 3e-06 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.015G142200 [exp] 43 / 0.0004 AT5G07240 138 / 3e-36 IQ-domain 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10042027 pacid=23153456 polypeptide=Lus10042027 locus=Lus10042027.g ID=Lus10042027.BGIv1.0 annot-version=v1.0 ATGGCGAACAACAGCAATAAAGGCAGCTGCTGGTTTGGTTGGATGAAGAAAGTCTTCACCTGCAAGCTTTCCGAAAAGAAATTGAAGAGAGGCAAATGGG AATATTGGATTTGTCGGAGGCTGAGACATCGACAGAACCGCCCAGCTGTTCTCCCTTCTACGACAACAAACAGACAACTCGCAGAGGCAAGAGAGCGCCA AAAGAACTACGCTCTCACCGTCGCCGTTGCCACCGCCGCCGCCGCTGAGGCCGCCGTTGTAGCTGCCAAAGCTGCTGCTGAGCTTGTCCACATCACCTCT TCTCATCACGCCAATCATTCACCTAAACCGGACCCTAATTGGACCGCCGCCGTTTTGATCCAGAGTGTTTTCCGTGCTTACCTTGCCAGGAAAGCGTTAC GAGCACTGAAGGGGGTGGTGAAGCTTCAAGCTATTGTCCGCGGCCAGTCCGTCCGACGCCGATTTTCCATCATCAAACTCGAGCATTTGACAATGCTGGA AACCTCTAGAGCCTCTAAAGATAATAACTTGCAGGTTAAAGGAGAGCACAGGAATCTCGAATCGATCAATTCGCTTACAAGCAGCAGCAGCAGCCACAGA AGTTGGGATTTCAGTAGACTTTCAAAGGAAGATATAGAAATCTTATGGTCAAGAAAGCAAGAGGGTAACATCAAACGAGATAGGATGATGAGATACTCCT TCTCCCACCGGGAAAGGAGGAACACACAAATATTGGAAGAACTATTGCTAGAGAATGAGGCAAGTTGTAAGGACGGTAGCAACTGGATGGAGAACTTGAG GCTAGTTGTTCCTATGTCTACATCATTCAATGGCGAACTAGCCACAGAAACTGAGACCTCCTCCTCACATCTCAAAACCAAGAATCGAACAAGGAAACTT TATCGTAGCGATTCTGTTACTGCTGCTGATCATGATGGTAACGATTGCAGTTCGCCATCGATTTCATCAGCACGAAGATCATTTGGACATACTGAGCAAG GGGCAAGCAGCTCAACGAGAGATAACGCATTCGACAGTTGTTCAGTCCCGGTGAGTAGCTCGCCGGCTTTGCCGACTTACATGGCTGCGACACAGTCAAC GAGAGCAAGGATAAGATCGCTGAGCACGCCGAGGCAGAGAGGTCAGGACCGGAGCGAGATACAGGGTTACAAGAGCAAAGGTGGTGGAATAATGCAGTCC CTTTGGTCTTCTGATAATCATAATGGAGAAGTATTTAGTTGTGATGCTGGGAAATCTTCATGTGGTCAGGAAATGCCGTTCCTCAAGAGTAAGGTTCATC ACCGTGGATTCAGCGCTTCTTCTTCTTCTTCCCAGCACAAGAATTGGTAA
AA sequence Show only first row Show all	>Lus10042027 pacid=23153456 polypeptide=Lus10042027 locus=Lus10042027.g ID=Lus10042027.BGIv1.0 annot-version=v1.0 MANNSNKGSCWFGWMKKVFTCKLSEKKLKRGKWEYWICRRLRHRQNRPAVLPSTTTNRQLAEARERQKNYALTVAVATAAAAEAAVVAAKAAAELVHITS SHHANHSPKPDPNWTAAVLIQSVFRAYLARKALRALKGVVKLQAIVRGQSVRRRFSIIKLEHLTMLETSRASKDNNLQVKGEHRNLESINSLTSSSSSHR SWDFSRLSKEDIEILWSRKQEGNIKRDRMMRYSFSHRERRNTQILEELLLENEASCKDGSNWMENLRLVVPMSTSFNGELATETETSSSHLKTKNRTRKL YRSDSVTAADHDGNDCSSPSISSARRSFGHTEQGASSSTRDNAFDSCSVPVSSSPALPTYMAATQSTRARIRSLSTPRQRGQDRSEIQGYKSKGGGIMQS LWSSDNHNGEVFSCDAGKSSCGQEMPFLKSKVHHRGFSASSSSSQHKNW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	0	1
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	1.4	0.7902
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	3.5	0.7850
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	9.9	0.7310
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	11.4	0.7750
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	12.3	0.7734
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	17.7	0.6786
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	20.2	0.7520
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	20.5	0.7541
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	23.2	0.6186
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10039488 [exp]	28.9	0.6499

Compare expression of checked genes

Lus10042027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.