Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57200 647 / 0 unknown protein AT3G08550 642 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT2G41451 611 / 0 unknown protein AT3G61030 113 / 2e-26 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 112 / 9e-26 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018036 [exp] 914 / 0 AT3G57200 705 / 0.0 unknown protein Lus10039569 [exp] 612 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 552 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10000243 [exp] 218 / 6e-68 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 47 / 6e-06 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041900 [exp] 699 / 0 AT3G57200 744 / 0.0 unknown protein Potri.003G202900 [exp] 631 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.001G022700 [exp] 630 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.006G045500 [exp] 619 / 0 AT3G57200 646 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10042032 pacid=23153620 polypeptide=Lus10042032 locus=Lus10042032.g ID=Lus10042032.BGIv1.0 annot-version=v1.0 ATGGCGGGTCCAATCAGACCCACATTTCAATCCCCTTCGTCTTCATCATCATCATCATCTTCTCATCAGACCTTCGTTTCCCGTCTCCTCTTTCTCCTCA CTCTCATCCCTTTCACTCTCGCTGCTTTCGCATTCGTTCTCCAATGGCGCGGGGGGTTTCTGAACGACCCCGTCTCCAGATGGTCTCCTGAAATCAATCA TCAGTTCCCAGGAATGGCGACGATCAATTCTGTCTCCGACGATCGCCATGCTGCGGTGGATAGAAGTTCCGGTTCCGGATGCTCTCTCCTTGGTCCCAGC CGTTCTGCTTCCTTCCCTTACTACCGGAATTGGACGTTCGACGTCGCGCCGGATCTAAATCCCAAGATCTGTATAACAACAAGTACTTCTGCTGGCTTAG AACAGATTTTACCATGGCTCTTCTATCACAAGGTCCTTGGGGTTTCAACTTTTCTTCTTTTCGTGGAGGGAAAGGCTGCCTCACCAACTGTATCTAAAGT TCTTGAAACTATTCAGGGTGTGAAAGTTATTTACAGAACTAGAGAACTCGAGGAGCAACAAGCTAATAGCCGTGTGTGGAACGAAACTTGGTTGTCGAGC TTCTTCTACAAACCGTGCAATCATGAGTTATTTGTAAAGCAAACACTCAATATGGAAATGGCTATCGTCATGGCAAGGGAGGCAGGAGTTGATTGGATAT TCCACCTTGACACAGATGAGCTGATTTATCCTGCGGGAGCTGCTGAGTATTCTTTGACACGGCTGCTATCTGATTTGCCTAGAGATGTCGATATGGTTAT ATTTCCAAATTACGAGAGTAGTGTTGAGAGGGATGATATCAAGGAACCTTTCAGTGAGGTCTCAATGTTCAAAAAAAATTATGATCATCTTCCTCGAGAT GTCTACTTTGGAAATTATAGAACAGCCACCCGTGGTAATCCAAACTACTTTCTAACGTATGGAAATGGCAAGTCCGGTGCTCGTGTTGTAGATCATCTTC GCCCCAATGGTGCACATCGATGGCATAACTACAGGAAATCTCCAAACGAAGTCAAATTTGAAGAGGCTGCTGTTCTGCATTATACATATCCTAAATTCTC TGATCTAACTTCAAGACGTGATCGCTGTGGATGTAAACCCACTAAAGAGGATGTCAAGAGGTGCTTCATGTTGGAATTCGACAGAGCTTCACTCTTCAAG TTTTTCCTAGCTGCACTGGGAAACAAATTGCGTAGTGTTCTTATGTTCATCATGCTGGTTAAACTTTTCCTTGTGGTTTTAGGTCCAGTTGACATTAAAG CCTTCATAATTGCTTCAACTGCAACAGACGAAGAGATGCTCCGCTGGTATCGAGAACGTGTCGTATGGACAGACAAACAATTGATCATCAAACTTCAAAG AAAGGGCATCCTAACTCGCATTTACTCCCCCATGGTCATTATTCAAGCACTGCGAGAAGCCGGAGTTTTCAGCTCAGTGATATCAGCAGCAGCAGAGACG AAGAACATCACAGTTCAGGAGTTCTCATCATCAGTGAGTAACACTACTACTACGAACCCATCTCGACCGAACATACCACTACGTTCGAGGAAGATGGGTC ATGAGAAGATGGAAGAATCATCTCAAGCAATCGGAAGAAGGGTATTGGAGATCAGTACGAACAACATGTCGTCTACATATCCATCAGCAGTTCCTCCGCT TTCCCCTCCCGGCATGATTGACGACATTATCGACATGGATATGACATGA
AA sequence Show only first row Show all	>Lus10042032 pacid=23153620 polypeptide=Lus10042032 locus=Lus10042032.g ID=Lus10042032.BGIv1.0 annot-version=v1.0 MAGPIRPTFQSPSSSSSSSSSHQTFVSRLLFLLTLIPFTLAAFAFVLQWRGGFLNDPVSRWSPEINHQFPGMATINSVSDDRHAAVDRSSGSGCSLLGPS RSASFPYYRNWTFDVAPDLNPKICITTSTSAGLEQILPWLFYHKVLGVSTFLLFVEGKAASPTVSKVLETIQGVKVIYRTRELEEQQANSRVWNETWLSS FFYKPCNHELFVKQTLNMEMAIVMAREAGVDWIFHLDTDELIYPAGAAEYSLTRLLSDLPRDVDMVIFPNYESSVERDDIKEPFSEVSMFKKNYDHLPRD VYFGNYRTATRGNPNYFLTYGNGKSGARVVDHLRPNGAHRWHNYRKSPNEVKFEEAAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRASLFK FFLAALGNKLRSVLMFIMLVKLFLVVLGPVDIKAFIIASTATDEEMLRWYRERVVWTDKQLIIKLQRKGILTRIYSPMVIIQALREAGVFSSVISAAAET KNITVQEFSSSVSNTTTTNPSRPNIPLRSRKMGHEKMEESSQAIGRRVLEISTNNMSSTYPSAVPPLSPPGMIDDIIDMDMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57200			unknown protein		Lus10042032 [exp]	0	1
AT3G49720			unknown protein		Lus10011564 [exp]	8.1	0.7746
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	10.0	0.7878
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10026992 [exp]	11.5	0.7528
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	11.8	0.7571
AT3G57200			unknown protein		Lus10018036 [exp]	12.0	0.7473
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	15.2	0.7477
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	15.8	0.7837
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	20.8	0.7189
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	23.8	0.7261
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	25.3	0.7311

Compare expression of checked genes

Lus10042032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.