Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10140 355 / 5e-121 RECA3 RECA homolog 3 (.1) AT2G19490 271 / 5e-88 recA DNA recombination family protein (.1) AT3G32920 158 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G79050 162 / 1e-45 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018037 [exp] 635 / 0 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10017151 [exp] 265 / 3e-85 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10021585 [exp] 264 / 4e-85 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10026204 [exp] 159 / 1e-44 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2) Lus10042462 [exp] 159 / 1e-44 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057700 [exp] 417 / 1e-145 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 410 / 4e-143 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.018G067900 [exp] 281 / 7e-92 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 276 / 1e-89 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.001G438900 [exp] 148 / 1e-40 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00154 [flax] [poplar] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Lus10042033 pacid=23153585 polypeptide=Lus10042033 locus=Lus10042033.g ID=Lus10042033.BGIv1.0 annot-version=v1.0 ATGGAGGTTTTTGAATGGATATTTGCAGCTGGAGTACCGGATTTTGAATTTGATGGAGTCCCTGATGATGGCAAAGCAGCAAAAAAGGATTATGCTCTTC GTCTGGCTCTTTCCCAGCTTGATGGTGAAACTGGCGGAGAGTCTATGTCGTTCCTACAGCGTTTTTTTGGTTCACGGAATGCACCTGTGGTTTCTACAGG CTCATTAAGGCTGGACCTAGCACTTGGTAATGGAGGATTGCCCAAGGGAAGAATGGTTGAAATATATGGGCAGGAATCTTCTGGCAAGACAACACTTGCA CTTCACATCATCAAGGAAGCTCAAAAGCGCGGAGGGTATTGCGCCTATCTTGATGTAGATAATACACTGGATAGTTCGCTTGTCGAAGCAATAGGTGTCA ACACAGATAATCTACTTATTTCGCCTCCAGATTCTGCCGAAAACATGCTCAGTATGGTTAATACTTTGACCAAAAGCGGTTCTGTAGATGTTATTGTTGT TGACAGTGTTGCTGCACTTGTCCCTCAACATGAAATCAACGGCATGATAGGAAGCTATGATGGAGATATACAGTCCCGCATTATGAATCAAGCATTAAGA AGAATTGATTATTCTTTGTGCCAATCTCAAACTCTTCTCGTTTTTATCAATCAGGTCGGAAATCATACGGTTAGATCAAGTGTGGGATCTGAACGGTATC TCCGAATTCCAGAAGAGGCAACTTGTGCAGGAAAAACCTTGAAATTCTATTCAGCAGTGAGATTGAAAATGCGCAGGAAAAAGCTGCTGAAGACTGATGG CAGGGTAACTGGACTCGGAGTTTGTGCAGAAGTGGTGAAAAACAAGCTGGGACCTGCAATGAAAACAGCAGAACTGGATATAGAGTTTGGGAGAGGCTTT TGCCGTCAGTCTGAGGTATTGCAATTGGGTTCTGAATATGGACTGATCACAAAAGAAGGATCCAGCTACATCATCAAAGGCCAAGTCTTTGATGGCGAGT TGGCAGCTCGACAGCATCTGGCCGAACAGAATGGCGTCCTCGATGAGATTGTTGCGAACTTAAGGAGCCATTTGTTTCCAGAGGTAGACAGATAA
AA sequence Show only first row Show all	>Lus10042033 pacid=23153585 polypeptide=Lus10042033 locus=Lus10042033.g ID=Lus10042033.BGIv1.0 annot-version=v1.0 MEVFEWIFAAGVPDFEFDGVPDDGKAAKKDYALRLALSQLDGETGGESMSFLQRFFGSRNAPVVSTGSLRLDLALGNGGLPKGRMVEIYGQESSGKTTLA LHIIKEAQKRGGYCAYLDVDNTLDSSLVEAIGVNTDNLLISPPDSAENMLSMVNTLTKSGSVDVIVVDSVAALVPQHEINGMIGSYDGDIQSRIMNQALR RIDYSLCQSQTLLVFINQVGNHTVRSSVGSERYLRIPEEATCAGKTLKFYSAVRLKMRRKKLLKTDGRVTGLGVCAEVVKNKLGPAMKTAELDIEFGRGF CRQSEVLQLGSEYGLITKEGSSYIIKGQVFDGELAARQHLAEQNGVLDEIVANLRSHLFPEVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	4.9	0.8702
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	5.2	0.8815
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	6.3	0.8692
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	9.2	0.8811
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10025709 [exp]	15.9	0.8168
AT1G03980		ATPCS2	phytochelatin synthase 2 (.1)		Lus10008241 [exp]	16.4	0.8455
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	21.9	0.8263
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	25.9	0.8061
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	29.0	0.8043
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	32.0	0.8115

Compare expression of checked genes

Lus10042033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.