Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04000 102 / 3e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018038 [exp] 226 / 9e-77 AT5G04000 103 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047800 [exp] 122 / 6e-36 AT5G04000 105 / 5e-30 unknown protein Potri.016G044001 [exp] 110 / 1e-30 AT5G04000 99 / 2e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042034 pacid=23153507 polypeptide=Lus10042034 locus=Lus10042034.g ID=Lus10042034.BGIv1.0 annot-version=v1.0 ATGGAAGTTGAAGATCATCGGTGGGGTAGATTAGATTCTCAAGGATTATGGCTCTTTTGCAGGATTTTTCCGCAGACTGTGGATCAGCACTTTGTACGCG AGGTTTCTATGGAAAAGAAGTCGCCTGAACCTGATGTGGATCCAACTGGCAAGACAACAAGACCGACTGAATCAAACATCCTTAGGAACGACACAAAACA AGCTTCTCCTGAACGTAACGTGCAATTCAAAAGTTGGGGGCACGAGGCTGCAGAAGTCGTAAATTGTAATGCGGATGATGGACGTTCGTACGGAGATGTA AACATGGAGGCTTCTATATCAATGGACGATATAATGCGTGCTGGAGGCTTTGGAGCTAGAGATGATATTGGCAGTGTTCTTCCTGTTGCTAGTGATTCAA CAGACTTCGAGGCTATGATTCTTGATGCTAAGGACTACGAAGAGCCACAGACGGAACTGCGAAGGCCAGGTCTTGGCTGGACAGATGCACCAGAAGAAAG CCCCTCTTCTGCTCATCCCTAA
AA sequence Show only first row Show all	>Lus10042034 pacid=23153507 polypeptide=Lus10042034 locus=Lus10042034.g ID=Lus10042034.BGIv1.0 annot-version=v1.0 MEVEDHRWGRLDSQGLWLFCRIFPQTVDQHFVREVSMEKKSPEPDVDPTGKTTRPTESNILRNDTKQASPERNVQFKSWGHEAAEVVNCNADDGRSYGDV NMEASISMDDIMRAGGFGARDDIGSVLPVASDSTDFEAMILDAKDYEEPQTELRRPGLGWTDAPEESPSSAHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04000			unknown protein		Lus10042034 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	1.0	0.8942
AT1G26750			unknown protein		Lus10016383 [exp]	3.5	0.8411
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	6.0	0.8588
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	8.1	0.8189
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	10.4	0.7543
AT4G04614			unknown protein		Lus10014685 [exp]	11.5	0.7907
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	11.8	0.7903
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	12.2	0.7989
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	13.2	0.8091
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	14.8	0.8297

Compare expression of checked genes

Lus10042034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.