Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 367 / 1e-122 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 359 / 6e-120 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 269 / 7e-85 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 234 / 1e-71 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT5G56970 226 / 8e-69 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 223 / 1e-68 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 218 / 7e-66 ATCKX2, CKX2 cytokinin oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018039 [exp] 485 / 6e-172 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 404 / 2e-139 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 394 / 3e-136 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10005317 [exp] 389 / 2e-133 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 390 / 1e-132 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 381 / 2e-130 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10024289 [exp] 262 / 3e-82 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10003845 [exp] 258 / 3e-82 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 236 / 3e-72 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G203600 [exp] 389 / 9e-132 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 387 / 7e-131 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 383 / 2e-129 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 381 / 1e-128 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 274 / 8e-87 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 271 / 1e-85 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 238 / 3e-73 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 211 / 7e-63 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 204 / 3e-60 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10042035 pacid=23154039 polypeptide=Lus10042035 locus=Lus10042035.g ID=Lus10042035.BGIv1.0 annot-version=v1.0 ATGGTATTTCGTACGTATGCAGCTTATTGTACGTACATTGCCCTACCCTTTAAAGATTGCTCATGGTCATGTTGCTACGCGGCCATATCCCTCACGAGTC CGAGCCTTGCAGTATCCGAGCTGAATCTATTCGAATTCGAGGACTGGAACATAGCACATGCAGCCAGAGATTTCGGCAACAGATTCCATTTCCCGCCGCT GGCTGTCTTGCATCCTAAGTCAGTCTCCGACATCGCGACCACTGTCAGCCACGTGTTCCAAATGAGCGCCGGTTCAGGCGACGTCGTCACTGTTGCAGCG AGAGGCCACAGCCACTTGCTGCAAGGGCAGGCACAAGCTCATGGTGGGATCGTTGTCAACATGGAATCACTCAAGCCGTGGCCGATGAGGATTATTACTA ATGATGATGGCAGCAGGCATTACGTGGAAGTGTCGGGAGGGGAGCTGTGGATTGATGTTCTGCGTGAGACGCTTAAGCATGGGTTGGCACCGAAATCATG GACGGATTACTTGCATCTCACGGTAGGAGGGACACTGTCCACCGGCGGAATCAGTGGTCAAGCCTTCCGGCATGGCCCTCAAATCAATAACGTTCACCAA TTGGAGGTCGTCGCAGGGAGTTGTAGTCAACTGTTTGGAGGACTCGGACAGTTTGGGATCATCACTCGAGCCACCATCACTCTTGAACCAGCGCCATCCA TGGTGAAATGGATCCGAGTTCTCTACTCGGATTTCTCCAAGTTCTCCAGCGACCAAGAACAGTTGATATCAACGGAACAAACCTTTGACTACATTGAAGG TTTTGTGGTGATCAACTCAACTGGCCTTCTGAATAACTGGAGATCCTCTTTCCATCCAAAAGATCCTGTTCATGCCACCCAGTTCGTTTCCGATGCCAAA ACCCTCTACTGCCTTGAAGTTGCCATGTATTACAATCCCAAGAACGACGACACCAAAATCATCGACATGGTGAAGTTCATACTCCGACAGTGGAACACAG TCAGCAAAACATCACTAATCACCCCAGCGGAACATGTTTTTTACCACGTTACGTTCTTGGCATCAGCGGTGCCATCTTCTACAGGAAAAGATGGGTTGGA CCACATTTTAGCGCGGAACCAACGAATACTTGACTTCTGTTCGGCTGCTGGTCTCGGTGTGAAGCAGTACTTGCCTCATTATACTACACAAGAAGAATGG AAAACTCACTTTGGCTCCAAGTGGGAAACTTTCCTACGGGGAAATTAG
AA sequence Show only first row Show all	>Lus10042035 pacid=23154039 polypeptide=Lus10042035 locus=Lus10042035.g ID=Lus10042035.BGIv1.0 annot-version=v1.0 MVFRTYAAYCTYIALPFKDCSWSCCYAAISLTSPSLAVSELNLFEFEDWNIAHAARDFGNRFHFPPLAVLHPKSVSDIATTVSHVFQMSAGSGDVVTVAA RGHSHLLQGQAQAHGGIVVNMESLKPWPMRIITNDDGSRHYVEVSGGELWIDVLRETLKHGLAPKSWTDYLHLTVGGTLSTGGISGQAFRHGPQINNVHQ LEVVAGSCSQLFGGLGQFGIITRATITLEPAPSMVKWIRVLYSDFSKFSSDQEQLISTEQTFDYIEGFVVINSTGLLNNWRSSFHPKDPVHATQFVSDAK TLYCLEVAMYYNPKNDDTKIIDMVKFILRQWNTVSKTSLITPAEHVFYHVTFLASAVPSSTGKDGLDHILARNQRILDFCSAAGLGVKQYLPHYTTQEEW KTHFGSKWETFLRGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	0	1
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	7.6	0.8762
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10028747 [exp]	10.6	0.8443
					Lus10016322 [exp]	17.2	0.8334
AT4G27300			S-locus lectin protein kinase ...		Lus10038555 [exp]	19.6	0.8466
AT1G10800			unknown protein		Lus10037441 [exp]	23.8	0.8689
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	25.4	0.8423
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	31.3	0.8621
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	42.9	0.8308
					Lus10027011 [exp]	48.6	0.8290
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10029685 [exp]	53.6	0.8477

Compare expression of checked genes

Lus10042035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.