Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07330 118 / 4e-34 unknown protein AT1G63060 75 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018040 [exp] 341 / 6e-122 AT5G07330 117 / 1e-33 unknown protein Lus10001796 [exp] 71 / 3e-16 AT1G63060 87 / 2e-23 unknown protein Lus10002567 [exp] 70 / 3e-16 AT1G63060 89 / 3e-24 unknown protein Lus10000001 [exp] 59 / 4e-12 AT1G63060 71 / 1e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111000 [exp] 153 / 1e-47 AT5G07330 130 / 4e-39 unknown protein Potri.015G109100 [exp] 151 / 5e-47 AT5G07330 133 / 3e-40 unknown protein Potri.012G110900 [exp] 99 / 1e-26 AT5G07330 81 / 5e-20 unknown protein Potri.003G160700 [exp] 96 / 2e-25 AT1G63060 114 / 4e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06522 [flax] [poplar] B12D NADH-ubiquinone reductase complex 1 MLRQ subunit
Representative CDS sequence Show only first row Show all	>Lus10042036 pacid=23153958 polypeptide=Lus10042036 locus=Lus10042036.g ID=Lus10042036.BGIv1.0 annot-version=v1.0 ATGGCAGCTTTCAGATCAACGGGCGTTTGGAAATCTGCAGTGAATTCTCTCAGAGGCAATAACGGAAACACCTACACTACATCAGCAGTAACCAAGATGA AATCGTACACCTCTCCTGCCGCCGCCGCCGACCAATCACGCAAGGATTCGGAGTCCAGGTGGTGGCCGCCGAGGAGGGATTACATTCCTGTGTATGTGGT GCTGGGGTTTATAGTGATGGCGACGTCGATGGGGGTTCACACCTTGATGCACCAGGTCCGTCACAATCCGTCGGTGAGGGTGAAGAAGAAGGAAAGGGAG ACGTTGCCGGAGGTTGTGGAGCCGGATAAAGTGGCGGACCAGTCTCACAAGTTTCTGGAGAATTCCTGGTTCAGGAAAGTGGCGCATGTTCAGGAGTTCA ACAGCGGGATCCAGAACTCGCCTGATACGAATACTGGCGATGTGTATGCCCATCCTCCGCGTAAGGAGTCGCTCAAATCCGTAGGAGTCGATCCTAAGCA GCAAGCAAGCCAGCCAGCAGGAAGATAG
AA sequence Show only first row Show all	>Lus10042036 pacid=23153958 polypeptide=Lus10042036 locus=Lus10042036.g ID=Lus10042036.BGIv1.0 annot-version=v1.0 MAAFRSTGVWKSAVNSLRGNNGNTYTTSAVTKMKSYTSPAAAADQSRKDSESRWWPPRRDYIPVYVVLGFIVMATSMGVHTLMHQVRHNPSVRVKKKERE TLPEVVEPDKVADQSHKFLENSWFRKVAHVQEFNSGIQNSPDTNTGDVYAHPPRKESLKSVGVDPKQQASQPAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07330			unknown protein		Lus10042036 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	1.4	0.9749
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10013797 [exp]	4.0	0.8486
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	4.5	0.9447
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	4.6	0.9309
AT5G35320			unknown protein		Lus10027608 [exp]	6.0	0.8855
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	8.7	0.9292
AT1G44414			unknown protein		Lus10018166 [exp]	9.4	0.9174
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	9.5	0.9221
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	9.6	0.9301
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10010897 [exp]	11.4	0.9036

Compare expression of checked genes

Lus10042036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.