Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04170 315 / 2e-106 Calcium-binding EF-hand family protein (.1) AT3G10300 311 / 3e-105 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT2G27480 162 / 3e-48 Calcium-binding EF-hand family protein (.1) AT4G37010 51 / 1e-07 CEN2 centrin 2 (.1.2) AT3G50360 49 / 8e-07 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT5G21274 43 / 8e-05 ACAM-6, CAM6 calmodulin 6 (.1) AT1G74740 44 / 9e-05 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) AT3G22930 43 / 0.0001 CML11 calmodulin-like 11 (.1) AT2G41110 42 / 0.0001 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 42 / 0.0001 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018041 [exp] 376 / 8e-130 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10035435 [exp] 337 / 1e-115 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 299 / 9e-103 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 208 / 2e-66 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 205 / 3e-65 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 47 / 3e-06 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10009353 [exp] 46 / 1e-05 AT3G50360 248 / 5e-84 CENTRIN 1, centrin2 (.1) Lus10019349 [exp] 47 / 2e-05 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009127 [exp] 46 / 2e-05 AT1G66400 147 / 2e-44 calmodulin like 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043600 [exp] 333 / 6e-114 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.006G047300 [exp] 326 / 2e-111 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.009G163600 [exp] 201 / 6e-63 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.004G202200 [exp] 198 / 5e-62 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.005G138000 [exp] 49 / 1e-06 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.004G089400 [exp] 48 / 1e-06 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.010G080900 [exp] 45 / 7e-06 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.017G126200 [exp] 45 / 8e-06 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.008G159300 [exp] 45 / 8e-06 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.016G117200 [exp] 46 / 3e-05 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042037 pacid=23153885 polypeptide=Lus10042037 locus=Lus10042037.g ID=Lus10042037.BGIv1.0 annot-version=v1.0 ATGTCCGGATACCCTTATCATCCTCCTTCCGGCTACAGCTACGCCGGTCCTCCACCGCCACAACCCTACGGATCCTCCGCCCCTCCTCAATCCCAACAGT ACGGATCCTCCGCCCCTCCTCAATCCCAACAGTACGGATCCTCTGCCCCTCCGCAATCCCAACAGTACGGATCCTCCGCCCATCCGCAATCCCAACAGTA CGGATCATCCGTCCCTCCACCGCCACAACAGTACGGGGCATCCGCCCCTCCACCTCCACAACAGTACGGATCCTCCGCCCAGCAGTATGGCTCCGCCCCT TCCTATAGCTCCCCTCCGCATCAGCAGCCCCACGGCGTACCCTCTGCTCCATACGGCGCACCATATGGAGCCCCAGCGGGCAGCAACAAGCCACCGAAGG AAAATCCATACGGTGCGTCTGCTCCGGGAGGAGGAGGGAGCAGTTATCCTCAGTCAGGGCCTTACGGAAGCCCTTTCTCTTCCTTGGTGCCGTCGGCTTT TCCTCCAGGGACCGATCCCAGCATCGTAGCGTGCTTCCAGATCGCCGATCAAGACGGGAGCGGTTTCATCGACGATAAGGAGCTCCAGAGAGCGCTTTCT GGCTACAATCAGAGCTTCAGCTTGAGGACTGTTCGCTTGCTGATGAACCACTTCACCAACACCAGCACAATGAAGATCGGACCAAAGGACTTCACTCAAG TATTTTACAGCCTTCAGAACTGGAGGGGGATTTTCGAGAGATTCGATAGGGATAGGAGCGGGAAGATTGATGCCAATGAGCTGAGAGAAGCGTTGTTAAG TCTGGGATTTGCAGTCTCTCCGGTTGTTCTGGACTTGCTGGTGTCTAAGTTTGATAAAACCGGTGGCAAGAACAATGCCATTGAGTATGACAATTTCATT GAATGCTGTCTTACTGTAAAGGGACTGACAGAGAAGTTTAAGGAGAAGGACACAGCATACACCGGTTCAGCAACTTTCACCTATGAAGCTTTCATGCTCA CCGTTCTCCCCTTCCTTGTCGCATAA
AA sequence Show only first row Show all	>Lus10042037 pacid=23153885 polypeptide=Lus10042037 locus=Lus10042037.g ID=Lus10042037.BGIv1.0 annot-version=v1.0 MSGYPYHPPSGYSYAGPPPPQPYGSSAPPQSQQYGSSAPPQSQQYGSSAPPQSQQYGSSAHPQSQQYGSSVPPPPQQYGASAPPPPQQYGSSAQQYGSAP SYSSPPHQQPHGVPSAPYGAPYGAPAGSNKPPKENPYGASAPGGGGSSYPQSGPYGSPFSSLVPSAFPPGTDPSIVACFQIADQDGSGFIDDKELQRALS GYNQSFSLRTVRLLMNHFTNTSTMKIGPKDFTQVFYSLQNWRGIFERFDRDRSGKIDANELREALLSLGFAVSPVVLDLLVSKFDKTGGKNNAIEYDNFI ECCLTVKGLTEKFKEKDTAYTGSATFTYEAFMLTVLPFLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	1.0	0.9060
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	1.7	0.8677
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	2.0	0.8803
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	6.3	0.8214
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	6.5	0.8193
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	7.0	0.8177
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10029162 [exp]	8.2	0.8334
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	9.2	0.8053
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	10.5	0.8088
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	12.3	0.7614

Compare expression of checked genes

Lus10042037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.