Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41530 464 / 4e-167 ATSFGH ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031051 [exp] 515 / 0 AT2G41530 473 / 9e-171 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10035437 [exp] 474 / 4e-171 AT2G41530 433 / 6e-155 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10018041 [exp] 82 / 2e-17 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047000 [exp] 473 / 2e-170 AT2G41530 442 / 2e-158 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00756 [flax] [poplar] Esterase Putative esterase
Representative CDS sequence Show only first row Show all	>Lus10042038 pacid=23153811 polypeptide=Lus10042038 locus=Lus10042038.g ID=Lus10042038.BGIv1.0 annot-version=v1.0 ATGGAGACGAAGCCGAGTGAGATCAGCAGTTCGAAGATGTTCGGAGGATACAACAAGAGATACAAGCATTTCAGCCCAACTCTGGGCTGCTCCATGACTT TCCACATCTATTTCCCACCGTCCTCTTCTTCCTCCCAGAAGAAGTTCCCTGTGCTTTACTGGCTCTCTGGCCTCACCTGCACTGATGAGAACTTCATAGT GAAGTCCGGTGCCCAACGTCTTGCATTCGCTGATGGCATCGCTTTGATTGCCCCAGATACATCTCCAAGAGGATTAAATGTAGAAGGAGAGTCCGAAAGC TGGGATTTCGGTGTCGGTGCTGGATTCTATCTCAATGCCACACAAGAGAAGTGGAAAAACTGGCAAATGTACGATTATGTCGTGCAGGAACTGCCGAAAC TTCTGACGGAGAACTTTCCTCAGCTTGATACATCCAGGGCCTCCATATCTGGTCATTCAATGGGAGGCCATGGTGCTTTGACAATCTACTTGAAAAATCT CGATAAATACAAGTCAGCATCTGCCTTTGCACCCATTGCAAATCCTATAAACTGTCCCTGGGGCCAGAAAGCTTTCACTAACTACCTTGGTGGAAATAAA GCAGACTGGGAAGAGTATGATGCTACCTGTCTTGTTTCCAAGTTCCATGACGTATCTGCCACCATTCTAATCGACCAGGGAGAGGATGACAAGTTCCTGA AGGAGCAGCTGCTGGTGGATAAGTTTGCAGAGGCGTGCAGCGGTGTGAAGGTTCCTGTCCTGGTACGAAGGCAGCCGGGCTATGATCATTCTTACTTCTT CATTGCCTCATTCATTGACGATCATATCCGCCACCATGTCCAGGCTCTGAATCTGTAG
AA sequence Show only first row Show all	>Lus10042038 pacid=23153811 polypeptide=Lus10042038 locus=Lus10042038.g ID=Lus10042038.BGIv1.0 annot-version=v1.0 METKPSEISSSKMFGGYNKRYKHFSPTLGCSMTFHIYFPPSSSSSQKKFPVLYWLSGLTCTDENFIVKSGAQRLAFADGIALIAPDTSPRGLNVEGESES WDFGVGAGFYLNATQEKWKNWQMYDYVVQELPKLLTENFPQLDTSRASISGHSMGGHGALTIYLKNLDKYKSASAFAPIANPINCPWGQKAFTNYLGGNK ADWEEYDATCLVSKFHDVSATILIDQGEDDKFLKEQLLVDKFAEACSGVKVPVLVRRQPGYDHSYFFIASFIDDHIRHHVQALNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	0	1
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	2.4	0.8962
AT3G09860			unknown protein		Lus10001400 [exp]	2.4	0.8949
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	4.9	0.8633
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	6.7	0.8477
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	8.4	0.8435
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	10.1	0.8162
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	11.0	0.8290
AT1G06980			unknown protein		Lus10006211 [exp]	14.0	0.8478
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	15.7	0.8445
					Lus10003566 [exp]	17.5	0.7959

Compare expression of checked genes

Lus10042038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.