Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10320 325 / 1e-108 Glycosyltransferase family 61 protein (.1) AT2G41640 301 / 2e-99 Glycosyltransferase family 61 protein (.1.2) AT3G57380 293 / 5e-96 Glycosyltransferase family 61 protein (.1) AT2G03360 166 / 1e-47 Glycosyltransferase family 61 protein (.1.2) AT2G03370 157 / 2e-44 Glycosyltransferase family 61 protein (.1) AT3G18180 125 / 3e-32 Glycosyltransferase family 61 protein (.1) AT3G18170 117 / 4e-30 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018046 [exp] 502 / 3e-178 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 331 / 7e-111 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 325 / 9e-108 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 315 / 3e-104 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10042044 [exp] 199 / 1e-58 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10036003 [exp] 134 / 2e-35 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 128 / 4e-33 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10032459 [exp] 122 / 6e-31 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1) Lus10036806 [exp] 119 / 4e-30 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 339 / 7e-114 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 318 / 9e-106 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 160 / 2e-45 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 158 / 1e-44 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 157 / 4e-44 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 137 / 2e-36 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 132 / 1e-34 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 128 / 3e-33 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10042043 pacid=23153603 polypeptide=Lus10042043 locus=Lus10042043.g ID=Lus10042043.BGIv1.0 annot-version=v1.0 ATGATCGTTTACAGGAATGCAGGCATGGGGTGGGATCAGCAGCAGCATCGTCGTCCAAAGTTTCTCCATCTCCTTCTTCTCTTTCTCTTCCTCCCCTCTT GCATCCTCATCTTTGCTCTTCTTCATAGCTTCCCTCCTTCCGCACCAAATATAACATGCGACAGAAGCAGCATCAGAACAGACGTCTGCTTAATGAAAGG ATGCCTGATCTCAACACACTCCCCGTCCGCATCTCTCATCCTCTACACCTCACAATCAACATCATCAGCATCAACCACCAACTCCTCCACCGAAATCCAG CGCGAAAACATCAGACCATACACCCGAAAATGGGAGACCAGCGTCATGAACACCATCGACGAGCTCCACCTCATCATAAAAAATATCCCAGACCACCATC ACAAAAACTGCAACGCCATCCACAACGTTCCCGCAGTGTTCTTCTCCACAGGAGGATACACGGGCAACGTCTACCACGAGTTCAACGACGGGCTGATCCC GCTCTACATCACGTCCCAGCATTTCAACAAACAGGTGGTGTTCGTCATCCTGGAGTACCACGTCTGGTGGATATCCAAGTACGGAGATGTTCTCTCCCAG CTCTCTAACTACTCTGCCGTTGACTTTAATGGAGACAACAGGACGCATTGCTTCCCGGAAGCCATCGTCGGCCTCAAAATCCACGATGAGCTCGCGATCG ACCCTTCCCTGAGCAACAACAGGACCACCATCGTGGACTTCCACAACCTCCTCGATCGTGCTTACCGGCCTCGAATCAGTTTCCTCCTCCAGGTAGAGAG TCATATATTCAACAACAGCAAACCCCACGTCCCGAAGCTAGCCATTGTCTCTCGAAAAGGATCCCGAGCCGTAACCAACGAGGACTCGCTGGTAAAACTG GGGGAAAAAATTGGATTCCAAGTAGAAGTACTTCGGCCCGACAGGACCGCCTAG
AA sequence Show only first row Show all	>Lus10042043 pacid=23153603 polypeptide=Lus10042043 locus=Lus10042043.g ID=Lus10042043.BGIv1.0 annot-version=v1.0 MIVYRNAGMGWDQQQHRRPKFLHLLLLFLFLPSCILIFALLHSFPPSAPNITCDRSSIRTDVCLMKGCLISTHSPSASLILYTSQSTSSASTTNSSTEIQ RENIRPYTRKWETSVMNTIDELHLIIKNIPDHHHKNCNAIHNVPAVFFSTGGYTGNVYHEFNDGLIPLYITSQHFNKQVVFVILEYHVWWISKYGDVLSQ LSNYSAVDFNGDNRTHCFPEAIVGLKIHDELAIDPSLSNNRTTIVDFHNLLDRAYRPRISFLLQVESHIFNNSKPHVPKLAIVSRKGSRAVTNEDSLVKL GEKIGFQVEVLRPDRTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	4.2	0.8788
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	7.4	0.8402
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Lus10010750 [exp]	7.8	0.8836
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	8.5	0.8506
AT3G51520			diacylglycerol acyltransferase...		Lus10039136 [exp]	11.0	0.7050
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	14.1	0.8349
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003124 [exp]	15.5	0.8568
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	20.8	0.7974
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	22.0	0.8253
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	28.7	0.8096

Compare expression of checked genes

Lus10042043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.