Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41640 232 / 1e-68 Glycosyltransferase family 61 protein (.1.2) AT3G57380 209 / 5e-60 Glycosyltransferase family 61 protein (.1) AT3G10320 193 / 2e-54 Glycosyltransferase family 61 protein (.1) AT2G03370 125 / 1e-30 Glycosyltransferase family 61 protein (.1) AT2G03360 117 / 5e-28 Glycosyltransferase family 61 protein (.1.2) AT3G18170 100 / 9e-23 Glycosyltransferase family 61 protein (.1) AT3G18180 98 / 2e-21 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018048 [exp] 357 / 3e-116 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10035441 [exp] 252 / 4e-76 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 249 / 2e-74 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 219 / 6e-64 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042043 [exp] 199 / 3e-58 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10031058 [exp] 177 / 3e-46 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10036806 [exp] 119 / 1e-28 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10032454 [exp] 102 / 4e-24 AT3G18170 197 / 6e-61 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 102 / 2e-23 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 238 / 1e-70 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 232 / 3e-68 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 114 / 5e-27 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 110 / 2e-25 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 109 / 3e-25 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 105 / 1e-23 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 104 / 2e-23 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 103 / 4e-23 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10042044 pacid=23153722 polypeptide=Lus10042044 locus=Lus10042044.g ID=Lus10042044.BGIv1.0 annot-version=v1.0 ATGATCGGAGTGCACGGAGCGGCGATGACGCATCTCTTGTTCATGAGACCGGGGAGCGTGTTCGTCCAGGTAATTCCGTTGGGCCTGGAGTGGGCTTCGG AGACGTATTACGGAGAGCCCGCGAGGAAGATGGGGTTGAAGTACATCGGGTACAGGATTTTGCCGAGGGAGAGCTCGCTGTATGAGAAGTATGACGAGAA TGACCCTGTGCTAAGAGATCCGCAGAGCGTTTCGGCTAGAGGGTGGAACTGGACCAAGGCTATCTATCTTGATGCTCAGAATGTTGTGTTGGATGTTGAG AGGTTTGAGACGAGGCTGTTGAGGGCTTATCGGTATGTTTATGCAGCAGCAGGTCATGAAGCAGTCTGCCAGTCGCAGACAGCATCAGCACCGGATTCCT TCACTATCACCACAGCTCAGCTGGCACAGCTAGTGGCCAAAGGCAAATATCTGGCTGTACAGAGCAAGAAAAGCAAGAAACTTTACTGGAATGCAGCCAT GGGGTTGCACCAGCATCGTCCCAAGAACCACCTTCACCACCACCACCACCTTCAGCAGCAGCCGTTGTTAGAAGACGATGTGGAGATTAATGGCGGCGGT GGTGGAGGAGGAGGAGGAGGAATTTTAGTTATGTTTGCAAAGAGGCAACAAACATTAGCAAATGCAACGACTAGACCGAAGCTTCTTTCTCTCCTCTTCC TCTCCCTCCTCTCTTGCTTCCTCATCCTCACTCCTCACTTCTTCCCTTCCTTCTATTCGCTCGATTCTCTTTCACATATGGACTCCAGCGTCCCTCTTTG CTCTTCTGTCCCCAACGGAACCATTTGCTGTGACAGAACCAGCAGCATCCGTACAGACGTCTGTGTAATGAAGGGAGACATCCTAACCCAATCGACCTCT TCCTCCATCTTCCTATTCACCAAACAACAGGGATCCAAAATCCACCACGAAAAGATCAGACCTTACACTCGAAAATGGGAGTCCAGTGTTATGAACACAA TCGACGAGCTCCACCTCATCTCCAAGCCAGCAGCGGGTCAAGAAGAAGAAGAACACCACAACAGCCGCCGTCGTTGTGACGTCACCCACGACGTCCCGGC AGTGGTCTTCTCCACGGGAGGGTACACGGGGAACGTCTACCACGAATTCAACGACGGGCTAATCCCTCTCTACATCACATCCCAGCATTTCAACAAACAG GTGGTGTTCGTCATCTTGGAATACCACGACTGGTGGATTACTAAGTACTCCGACGTCCTCTCCCAGCTCACCGTCTCACCGGCGCTCGCGTGTTCAGGAG GCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTGTCCCGTGGGGAAGGGGGGGGCCCCGCCGGTAGCTACTACGGCGAACCGGCTAGGAA GATGGGTCTGAAGTACATTGGGTATAGAATTCTCCCGAGGGAGAGCTCGTTATACAAAAAGTACGACGAGAACGATTCTGTTTTGCGGGACCCAGAGTGG GTTTCGCAGAGAGGTTGGGAGGTCACGAAATCGATATATCTCGACGGGCAGAATGTGGTACTGGATTTGAAGAGGTTTCGGAAGCGGTTGTGGAGGGCTT TTGGTTATGAGCTTATGGTTATGCGATTGGTAATGTTATGA
AA sequence Show only first row Show all	>Lus10042044 pacid=23153722 polypeptide=Lus10042044 locus=Lus10042044.g ID=Lus10042044.BGIv1.0 annot-version=v1.0 MIGVHGAAMTHLLFMRPGSVFVQVIPLGLEWASETYYGEPARKMGLKYIGYRILPRESSLYEKYDENDPVLRDPQSVSARGWNWTKAIYLDAQNVVLDVE RFETRLLRAYRYVYAAAGHEAVCQSQTASAPDSFTITTAQLAQLVAKGKYLAVQSKKSKKLYWNAAMGLHQHRPKNHLHHHHHLQQQPLLEDDVEINGGG GGGGGGGILVMFAKRQQTLANATTRPKLLSLLFLSLLSCFLILTPHFFPSFYSLDSLSHMDSSVPLCSSVPNGTICCDRTSSIRTDVCVMKGDILTQSTS SSIFLFTKQQGSKIHHEKIRPYTRKWESSVMNTIDELHLISKPAAGQEEEEHHNSRRRCDVTHDVPAVVFSTGGYTGNVYHEFNDGLIPLYITSQHFNKQ VVFVILEYHDWWITKYSDVLSQLTVSPALACSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSRGEGGGPAGSYYGEPARKMGLKYIGYRILPRESSLYKKYDENDSVLRDPEW VSQRGWEVTKSIYLDGQNVVLDLKRFRKRLWRAFGYELMVMRLVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	1.4	0.9073
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	2.4	0.8983
AT1G54200			unknown protein		Lus10026463 [exp]	3.7	0.8535
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	4.5	0.8839
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	6.5	0.8759
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	8.1	0.8344
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	8.1	0.8618
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039367 [exp]	8.3	0.8339
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	8.7	0.8880
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	9.1	0.9012

Compare expression of checked genes

Lus10042044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.