Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 858 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 620 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 602 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 529 / 5e-172 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 501 / 2e-160 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G73860 490 / 4e-157 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 468 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 464 / 1e-146 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 449 / 3e-142 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27550 314 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018049 [exp] 1912 / 0 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10031058 [exp] 1305 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10035442 [exp] 1256 / 0 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 583 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 516 / 1e-166 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10032897 [exp] 503 / 1e-160 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 484 / 2e-155 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 485 / 3e-155 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10032264 [exp] 469 / 1e-147 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048650 [exp] 743 / 0 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 624 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 624 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 622 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 621 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 502 / 2e-160 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 501 / 4e-160 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 481 / 5e-153 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 466 / 6e-147 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 449 / 3e-141 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10042045 pacid=23153676 polypeptide=Lus10042045 locus=Lus10042045.g ID=Lus10042045.BGIv1.0 annot-version=v1.0 ATGGAGAGGTCCACCACGTCTGGGTTTTACAACGTCTTGGCTTCACGAAAAGCCGAGGAAGCTGTTTGGAGGCGTTACCAAGCTACTGAGTGGCTCGAAA GCCTAGTGGGTCCGTTGAGTATACCGAGCCATCCGTCGGAGAAAGAATTCATTTCTCGATTGAGAAATGGATTGATTCTTTGCAATGCCATTAACAAAGT CCATCCAGGATCAGTAACTAAGGTTGTGGAGAATCACGTGCCTGTGCAATCCCTAACTCGAGAATCCCAACCATTACCAGCGTATCAGCACTTTGAGAAT GTAAAGAATTTCCTAGTAGCTATGGGAGATTTGAAACTTCCGGCATTTGAAGCTTCTGATCTAGAAAGGGATACATTGGAACTGGAAGCAGGATCAACTG CTAAGGTGGTTGATTCAATCTTGGCCTTGAAGTCATACCATGAGCACAAGAATATGAATGGTAGTAATGGGGCTTTCAAGTCTACAAAATCCCCTATGGT TTCTCACAGTGCGTCGAGGAGAAATCTCCAGGGGTTGTCGTCAGATTCTTGTCGGCGGTTGGAGATGAATGTAGCATGCAAGGGACATCTATCAGGCAAT GCTGACAGTCAGAAACTGGAAGATGAACTGATCAAGGTACTTGCAGAATACATGGCTGATACAAAAGAAAACATGGGTGACTACTTTCTCACCTCTTTCC GAGCTGGGAATGTGGATCCAATGAAGCTATTTGGTAGGATCGTGTCAAGTTGTCTCAAGGACAATCTACATAAGTTTCCTGAGGGCCAGACAGTGGTCAT GGACACCTTGAAAGAGAGTAGTAATTTACCTGCTCATTTGGAAGCGACTCCATTGGATGACATATCTGATCGCAGAAATAGTAAGTGTTGTCGAACATGC TTAAGGAAAGGCAATTGCAATCACAGGCGTTTACTGCAAGCCCAGGAAAGAGAACTTCAGAACCTGAAGACCTTGTTAACTACAACAAGGAAAGAGTTTG AAGGCTTGCAATTCCAGTTGCAGAGCGATCTGACACAGTGCAGCATTCAGGTTCAGGAGATGTCTAGAGCTGCTCAAGGATATCACAAAGTGTTGAAAGA AAACAGAATTCTGTACAACATGGTTCAGGATTTGAAAGGAAATATTCGAGTTTATTGTAGAGTAAGACCATCTTTCACCGCTGGAGCAAGCAATGCAATG GAATTTGTTGGAGAGGATGGCTCACTAGTGATTGTAGATCCATCAAAGCCCACGAAAGATGGAAGGAGGCATTTTCAGTTCAACCAGGTTTTTGGTCCTA CCGCCACCCAAGAAAATGTGTTTGAACATGTCCAACCCCTAATCAGATCAGTGATGGATGGCCACAATGTATGCATTTTTGCTTATGGCCAAACCGGCTC TGGTAAAACATACACAATGAGTGGTCAAGGTGGATCTACCAAGGAGCTGGGAATAAATTACCTGGCCCTCACTGACCTTTTCCAGATGTCTGATAGAAGA AAAGATGTCGTAAACTATGATATACAAGTTCAGATGGTGGAGATATACAATGAACAAATACGGGACCTTCTTACTGAAGATTCTTCAGCCACCAAATATC CTTTTATGCTTTCAATTACTAGTTGTGCTGGGGATGATGGTCTAACTCTTCCGGATGCTACGTTGCTCCCTGTGACATCTACTTCTGATGTTCTTAATTT GATGAAACTTGGTGAGGTGAATCGTGTTTTCAGTTCTACTGCAATGAATAATAGAAGCAGTCGTTCCCACAGTGTCCTGACAGTTCACGTGCATGGCAAA GAAGAGTCTGGAGCTAATCTCCGCGGCTGCCTGCATTTGGTGGACTTAGCCGGAAGCGAAAGAGTTGACAAATCGGAAGTTACCGGGGATAGGCTCAAGG AGGCAACATATATCAACAAATCTCTTTCATGCCTAGGGGACGTGGTCACAGCATTGGCACATAAGAATTCTTACATTCCATACAGAAACAGCAAACTCAC ACTTCTGCTCCAAGATTCCTTAGGTGGACATGCTAAAACACTGATGTTTGCTCATGTGAGCCCAGAAGAAGACTTCTTATCAGAGACTATCACCACCTTG AAGTTTGCTCAGCGGGTATCCAGCGTTGAACTTGGCGCGGCTAGTGCAAACAAAGAGAGCAGCGGGATTATGCAATTGAAAGAACAGGTTGAGAACCTCA AAAGGGCCATGACTAACAAACAGTCATCTAATGAAGCAAGATCTCCAATTGGGAAATCAAATGCAGGTGCTGGAAGAACACCGCCACGGTCAAGGAGACT CAGTATTGAGAACATCAGCAGCAACAATAAGCTGACCAAGACCACAAACCATGATGACAGGAAGGCATTGAAGACTCCTCCCTTGCCTACCCGTTCTCGA AGGCTAAGTTTGGAAGCTCCAACTTACAGTAAAAGGGATGAGGATTTCTTGACAAAACAAGCAGATGACGAAACAATAAGGAAGCCCCTTCGGTTTGAAC GGACACCAAAGCAGAACAACCATTCACAGGATGTAGAAGCCACACCAAAGAAGAACAACTATTCTGCAACGATTAGCAGCAATTCGTCCGCAAAGATTTA CCAACGTACTCCTCCTAGAAGTCCTACTAGTTCCTCATATCAAAGGCAAACACAAATTCTTCACCTTCATTTGCCATTAGCCACAGAAAACCAAGTGGTT GCGAGAAATGAAGTTCAGAATCTGATGCAAAGTCAAGTTGTCAGTTCCGCAACGGGCAGTGTTAATGGGAAAGGGTCTCAGATAAGGAAGTCCCTTCGGA CCATAGGAAAGCTGATTAACGGATCTGAAAAGAGGAAACAACGGAAAGAACAGTCCCAAGCAATTTTGAAGAGTTTGAATGAAGAAATCAAGTCACCAGT ACGGAGTAGCATCAAAAGGGCAGCAAGGAGGCAATCACTCACTGGAGTTTACAAGTCCTCAGTTGACTTAGGTGAGAGTTAG
AA sequence Show only first row Show all	>Lus10042045 pacid=23153676 polypeptide=Lus10042045 locus=Lus10042045.g ID=Lus10042045.BGIv1.0 annot-version=v1.0 MERSTTSGFYNVLASRKAEEAVWRRYQATEWLESLVGPLSIPSHPSEKEFISRLRNGLILCNAINKVHPGSVTKVVENHVPVQSLTRESQPLPAYQHFEN VKNFLVAMGDLKLPAFEASDLERDTLELEAGSTAKVVDSILALKSYHEHKNMNGSNGAFKSTKSPMVSHSASRRNLQGLSSDSCRRLEMNVACKGHLSGN ADSQKLEDELIKVLAEYMADTKENMGDYFLTSFRAGNVDPMKLFGRIVSSCLKDNLHKFPEGQTVVMDTLKESSNLPAHLEATPLDDISDRRNSKCCRTC LRKGNCNHRRLLQAQERELQNLKTLLTTTRKEFEGLQFQLQSDLTQCSIQVQEMSRAAQGYHKVLKENRILYNMVQDLKGNIRVYCRVRPSFTAGASNAM EFVGEDGSLVIVDPSKPTKDGRRHFQFNQVFGPTATQENVFEHVQPLIRSVMDGHNVCIFAYGQTGSGKTYTMSGQGGSTKELGINYLALTDLFQMSDRR KDVVNYDIQVQMVEIYNEQIRDLLTEDSSATKYPFMLSITSCAGDDGLTLPDATLLPVTSTSDVLNLMKLGEVNRVFSSTAMNNRSSRSHSVLTVHVHGK EESGANLRGCLHLVDLAGSERVDKSEVTGDRLKEATYINKSLSCLGDVVTALAHKNSYIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEEDFLSETITTL KFAQRVSSVELGAASANKESSGIMQLKEQVENLKRAMTNKQSSNEARSPIGKSNAGAGRTPPRSRRLSIENISSNNKLTKTTNHDDRKALKTPPLPTRSR RLSLEAPTYSKRDEDFLTKQADDETIRKPLRFERTPKQNNHSQDVEATPKKNNYSATISSNSSAKIYQRTPPRSPTSSSYQRQTQILHLHLPLATENQVV ARNEVQNLMQSQVVSSATGSVNGKGSQIRKSLRTIGKLINGSEKRKQRKEQSQAILKSLNEEIKSPVRSSIKRAARRQSLTGVYKSSVDLGES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	0	1
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	1.4	0.9838
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	1.7	0.9849
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	2.8	0.9807
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	3.5	0.9832
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	4.5	0.9744
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	4.9	0.9768
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	5.0	0.9772
AT3G52110			unknown protein		Lus10039611 [exp]	6.0	0.9728
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	6.3	0.9767
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	7.0	0.9768

Compare expression of checked genes

Lus10042045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.