Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 169 / 5e-51 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 144 / 2e-41 Protein of unknown function, DUF617 (.1) AT5G42680 134 / 3e-38 Protein of unknown function, DUF617 (.1.2) AT5G06990 128 / 2e-35 Protein of unknown function, DUF617 (.1) AT2G37880 123 / 1e-33 Protein of unknown function, DUF617 (.1) AT4G39610 123 / 2e-33 Protein of unknown function, DUF617 (.1) AT5G23100 122 / 3e-33 Protein of unknown function, DUF617 (.1) AT1G21050 119 / 4e-32 Protein of unknown function, DUF617 (.1) AT2G21990 118 / 8e-32 Protein of unknown function, DUF617 (.1) AT1G76610 114 / 1e-30 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018050 [exp] 418 / 6e-149 AT2G41660 171 / 1e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 182 / 1e-55 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 179 / 2e-54 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 136 / 1e-38 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10000863 [exp] 134 / 8e-38 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 133 / 2e-37 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 131 / 1e-36 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 128 / 3e-35 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 127 / 1e-34 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048800 [exp] 175 / 1e-53 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 165 / 8e-50 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 151 / 3e-44 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 139 / 3e-40 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.002G128800 [exp] 139 / 4e-40 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.012G058300 [exp] 139 / 5e-40 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 139 / 6e-40 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 139 / 9e-40 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 139 / 2e-39 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 133 / 2e-37 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10042046 pacid=23153897 polypeptide=Lus10042046 locus=Lus10042046.g ID=Lus10042046.BGIv1.0 annot-version=v1.0 ATGTATACATACTGGCCGGCGGAGAGAGACTGCAGCCGGAGATCATCAACATCAAGCGGAAGGATCACCCCATCATCCCCATATTCAAACTACTACTACA ATAGTACCACGCTGACTACCACCAGAACCTCCTTCTCCGACCAACAATATTATGACCACCACCGCCGCCACCTCATCCCATCTGACCAAAACAACAGGAA AGTCAAAGTCAACATATACATGAAATCCGTCTCCTTTCTCCGCACAATATTCCTCAACTTCCTTTCTCCACCTAACTCCATCATTCAACAACAACAACAA CAACAACAAATCATGATCCTGCCCCGCAAGAAGGTGACGACGACGTGTACTCTCTTCGGCTACCGTAGAGGACACGTCAGCTTCGCCGTCCACGTCTACG ATCCCAAGACCACCACTTCTGACCCGATCCTCCTCCTCCAGCTCCCCATCTCCACCGCCGCCCTCCTCGACGACATGGCTTCCGGTCTCGTCCGGATCTC CCTCGAGTGCCACACCAAGTCTGATGATGTGCTGATGAAGGAGCCAGCGTGGAGTATGTACTGCAACGGGAGGAAATGCGGCGGGAAAGCGGTGGCGCGG TGGAGCTACACTGTTCTTGACTCGCACGTGCTAAACACCGTCCGCAGCGTCTCGGTGGGGGCCGGGGTTATTCCTCCTCCTCCTCGTTCCACGTGCGGGG GTGGTGGTGAGTTGTTGTATATGAGGGCTAAGTTTGAGCGGGTTGTTGCGGGGAGTCGTGACTCGGAGGCTTTTCACATGTTGAACCCTGACAGTAGGAT CTGTACCGGGTCGGGACCTGAACTCAGCCTCTTCTTCCTCCGCTTCTGA
AA sequence Show only first row Show all	>Lus10042046 pacid=23153897 polypeptide=Lus10042046 locus=Lus10042046.g ID=Lus10042046.BGIv1.0 annot-version=v1.0 MYTYWPAERDCSRRSSTSSGRITPSSPYSNYYYNSTTLTTTRTSFSDQQYYDHHRRHLIPSDQNNRKVKVNIYMKSVSFLRTIFLNFLSPPNSIIQQQQQ QQQIMILPRKKVTTTCTLFGYRRGHVSFAVHVYDPKTTTSDPILLLQLPISTAALLDDMASGLVRISLECHTKSDDVLMKEPAWSMYCNGRKCGGKAVAR WSYTVLDSHVLNTVRSVSVGAGVIPPPPRSTCGGGGELLYMRAKFERVVAGSRDSEAFHMLNPDSRICTGSGPELSLFFLRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	0	1
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10042537 [exp]	3.3	0.6457
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	3.7	0.7703
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	9.9	0.7562
AT4G39420			unknown protein		Lus10008760 [exp]	11.5	0.7649
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	23.8	0.7228
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	23.8	0.6645
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	27.9	0.7251
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	30.2	0.6876
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10006579 [exp]	31.9	0.6626
AT1G04670			unknown protein		Lus10004041 [exp]	50.7	0.6427

Compare expression of checked genes

Lus10042046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.