Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65650 459 / 4e-163 UCH2 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT5G16310 418 / 1e-146 UCH1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) AT4G17510 64 / 2e-11 UCH3 ubiquitin C-terminal hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035444 [exp] 540 / 0 AT1G65650 494 / 1e-177 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10031062 [exp] 539 / 0 AT1G65650 502 / 1e-180 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Lus10020144 [exp] 79 / 1e-16 AT4G17510 349 / 2e-123 ubiquitin C-terminal hydrolase 3 (.1) Lus10026940 [exp] 74 / 3e-14 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075200 [exp] 527 / 0 AT1G65650 489 / 1e-175 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.004G130400 [exp] 514 / 0 AT1G65650 483 / 7e-173 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (.1) Potri.003G081000 [exp] 71 / 9e-14 AT4G17510 380 / 2e-135 ubiquitin C-terminal hydrolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF01088 [flax] [poplar] Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Representative CDS sequence Show only first row Show all	>Lus10042047 pacid=23153997 polypeptide=Lus10042047 locus=Lus10042047.g ID=Lus10042047.BGIv1.0 annot-version=v1.0 ATGTCTTGGTGCACTATTGAGTCCGATCCCGGTGTCTTCACGGAGCTCATACAACAAATGCAAGTTAAAGGAGTTCAGGACGTACTGCTAACTGGACTGG GAATAACCAGTTCTGGTGAAGTGATTGATTTCAATCGTAAGACATGTAGTTCGAATGTTATTGTTGCTGCTGTGTTACTCAGTCGAATGGTTGAGGAGTT GTATTCTTTGGACCTTGATTCTCTCGACAGTCTTAGGCCAGTATATGGCTTGATCTTTCTTTTCAAGTGGCGCCCTGGTGAAAAGGATGACCGTCCTATA ATTAAGGATCCAAATCCTGACCTCTTTTTTGCAAGTCAGGTAATCAACAATGCTTGTGCAACCCAAGCAATTCTATCCATCCTGATGAACTCTCCAGATT TAGACATTGGACCCGAGCTATCAAAGCTGAAAGAGTTCACCAAGAATTTCCCACCAGAACTCAAAGGGTTAGCCATCAACAACAGCGAAGCCATACGAAC TGCACATAACAGTTTCGCAAGACCAGAGCCATTCGTGGCGGATGAGCAGAAGGTCGCCGGGAAAGATGACGACGTATACCACTTCATTAGCTATCTACCT GTCGACGGCGTGCTTTACGAGCTTGACGGACTGAAAGAAGGCCCCATCAGCCTCGGCCAGTACGCTGGCGGTCACAACGATCTGGACTGGCTGCGTCTGG TGCAGCCGGTAATCCAGGAGCGAATCGAGAAGTACTCCAACAGCGAGATAAGGTTCAATCTCCTAGCGGTGATAAAGAATCGGAAAGAGATGTATACCGG TGAACTGAAGGAGCTTCAGAGGCAAAGGGAGCGCATCTTGCAACAGATAGCGGCTTCCCAGTCAGAAAGAGAGGGCGTAAACTTCGAGTCTCTGAGCAAG TCTTTGTCAGAGGTTAATGCCGGGATAGAAGCGGCGACGGCGAAGATACTGATGGAGGAAGAGAAGTTTAAGAAGTGGAGAACGGAGAATATCAGGAGGA AGCACAATTACATTCCGTTTCTGTTCAATTTTTTGAAGATCTTAGCTGAGAAGAAGCAACTGAAACCTCTGATAGAGAAAGCCAAGCAAAAAGCAGGGAA TGGAAAGTGA
AA sequence Show only first row Show all	>Lus10042047 pacid=23153997 polypeptide=Lus10042047 locus=Lus10042047.g ID=Lus10042047.BGIv1.0 annot-version=v1.0 MSWCTIESDPGVFTELIQQMQVKGVQDVLLTGLGITSSGEVIDFNRKTCSSNVIVAAVLLSRMVEELYSLDLDSLDSLRPVYGLIFLFKWRPGEKDDRPI IKDPNPDLFFASQVINNACATQAILSILMNSPDLDIGPELSKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVADEQKVAGKDDDVYHFISYLP VDGVLYELDGLKEGPISLGQYAGGHNDLDWLRLVQPVIQERIEKYSNSEIRFNLLAVIKNRKEMYTGELKELQRQRERILQQIAASQSEREGVNFESLSK SLSEVNAGIEAATAKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKAGNGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	0	1
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	1.0	0.8918
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	1.7	0.8851
AT5G64680			unknown protein		Lus10011265 [exp]	2.0	0.8881
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	2.0	0.8656
AT3G48660			Protein of unknown function (D...		Lus10011353 [exp]	2.2	0.8621
AT4G29390			Ribosomal protein S30 family p...		Lus10002508 [exp]	3.5	0.8469
AT3G11210			SGNH hydrolase-type esterase s...		Lus10027793 [exp]	5.5	0.8013
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	7.4	0.8307
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10030524 [exp]	8.0	0.8369
					Lus10007590 [exp]	8.7	0.7612

Compare expression of checked genes

Lus10042047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.