Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41680 777 / 0 NTRC NADPH-dependent thioredoxin reductase C (.1) AT2G17420 314 / 2e-102 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 309 / 2e-100 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT3G51030 40 / 0.0008 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018051 [exp] 870 / 0 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10006853 [exp] 311 / 4e-96 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10025845 [exp] 269 / 4e-86 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038256 [exp] 253 / 3e-80 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10037596 [exp] 129 / 5e-35 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10019550 [exp] 119 / 2e-31 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038255 [exp] 55 / 4e-09 ND 115 / 7e-32 Lus10014277 [exp] 41 / 0.0003 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049100 [exp] 798 / 0 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Potri.001G456800 [exp] 316 / 3e-103 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 311 / 2e-101 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10042048 pacid=23153796 polypeptide=Lus10042048 locus=Lus10042048.g ID=Lus10042048.BGIv1.0 annot-version=v1.0 ATGGCATTGAAATGGTGGGATATGGGAGCTCCTGCCAGGATAGATAAACATAGTAATCGGAGCAATAACCAATTCCCAGCTGGAGTAACCCTTCAGCCGT CATGTCCTCCGCCGCCGCCGCCACCACCACCTCCGCCGCTCTCTCTTTCCCTCCCCACTCTTTCTTCTTCCGTAAAGCCTCTTCCTTTCGGCCTCACCAA CAACGCTACCTCCCACCTACCACCTCCTCCTCACCTACTCCTCAACCCCACCTTACTTTTCGAGTCAAAGCTTCTTCCTCCGACTCTTCCTCATCTTCTT CCCAAGAAACTAACTTTGGTCAATGCTGATCGTAATTTATGGTTTGATCCTGCAGTGAGAGGCGCTGAGAATGTGGTAATCATAGGTTCCGGTCCTGCTG GATACACGGCAGCAATTTATGCGGCTCGAGCGAATTTGAAGCCTGTGGTTTTCGAAGGTTATCAGGCAGGTGGTGTCCCTGGTGGACAGTTGATGACTAC TACTGAAGTGGAGAACTTCCCTGGTTTCCCTGATGGAGTTACAGGTCCAGATTTGATGGACAGGATGCGGAAGCAAGCCGAGCGTTGGGGTGCCGAACTG TTCCAGGAAGATGTTGAATCTCTTGACGTTAAGAGCCATCCTTTTGTTGTGGAGAGTGGTGAGCGTAAGGTTAAATGCCATAGCATCATTTACGCCACTG GGGCTACCGCAAAAAGGCTCAAATTACCCCGTGAGGAGGAGTTCTGGAGTAGAGGAATTAGCGCTTGTGCAATTTGTGATGGAGCTTCTCCACTGTTTAA GGGGCAGGTTCTAGCTGTTGTTGGAGGAGGTGATACAGCTACAGAGGAAGCAATATTCTTAACAAAATATGCTCGCCATGTTCATCTACTTGTACGTAGA GACCAACTCAGAGCATCTAGAGCAATGCAGGATAGAGTGGTCAACAATCCAAACATCACTGTGCACTACAATACAGAGACTGTGGATGTGGTTAGCAATA CAAAGGGCCAGATGTCTGGTATTTTGACAAGAAAAACTGATACGGGCGAGGAAACCGTTATCGAGGCAAAAGGCTTATTTTATGGAATCGGGCATTCACC AAATAGCCAACTATTGAAAGGGCAAGTTGATCTTGACAGCACAGGCTATGTATTGGTTCAGGAGGGTTCTGCAAACACATCAGTGGAAGGTGTTTTTGCG GCTGGGGATGTACAGGATCATGAGTGGAGGCAAGCAGTCACTGCGGCTGGATCGGGATGCATTGCAGCTTTATCAGCAGAAAGATATCTTGTGAGCAATA ATCTGCTAATAGAGTTCCACCAGCCTCAAACTGAAGAGGTTAAGAAGGAACTGAGCGACAGGGACGTTCAGCAGGGCTTTGACATTACCCGTACGAAGCA TAAGGGCCAGTATGCTTTAAGGAAGTTGTATCATGAAAGTCCAAGGCTCATATGTGTATTATACACGGCACCAACTTGCGGTCCATGTAGAACTTTAAAG CCAATTCTTAGCAAGGTGATTGATGAATTTGATAAAAATGTACATTTTGTGGAGATCGACATTGAGGAAGACCAAGAAATAGCAGAAGCTGCTGACATTA TGGGGACACCGTGTGTTCAGTTCTTCAAGAACAAAGAGCTACTCAGGAAGGTGCCAGGGGTGAAAATGAAGAAAGAGTATAGAGAATTCATTGAAGCAAA TAAATAA
AA sequence Show only first row Show all	>Lus10042048 pacid=23153796 polypeptide=Lus10042048 locus=Lus10042048.g ID=Lus10042048.BGIv1.0 annot-version=v1.0 MALKWWDMGAPARIDKHSNRSNNQFPAGVTLQPSCPPPPPPPPPPPLSLSLPTLSSSVKPLPFGLTNNATSHLPPPPHLLLNPTLLFESKLLPPTLPHLL PKKLTLVNADRNLWFDPAVRGAENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGVTGPDLMDRMRKQAERWGAEL FQEDVESLDVKSHPFVVESGERKVKCHSIIYATGATAKRLKLPREEEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIFLTKYARHVHLLVRR DQLRASRAMQDRVVNNPNITVHYNTETVDVVSNTKGQMSGILTRKTDTGEETVIEAKGLFYGIGHSPNSQLLKGQVDLDSTGYVLVQEGSANTSVEGVFA AGDVQDHEWRQAVTAAGSGCIAALSAERYLVSNNLLIEFHQPQTEEVKKELSDRDVQQGFDITRTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRTLK PILSKVIDEFDKNVHFVEIDIEEDQEIAEAADIMGTPCVQFFKNKELLRKVPGVKMKKEYREFIEANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	0	1
AT5G19540			unknown protein		Lus10034912 [exp]	2.8	0.8917
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	4.0	0.8850
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	4.9	0.8622
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	11.7	0.8639
AT5G19540			unknown protein		Lus10023641 [exp]	12.2	0.8417
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10010082 [exp]	13.0	0.8623
AT3G25480			Rhodanese/Cell cycle control p...		Lus10001215 [exp]	17.3	0.8722
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	18.3	0.8699
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	18.8	0.8357
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	22.6	0.8601

Compare expression of checked genes

Lus10042048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.