Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17990 433 / 2e-149 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1) AT2G21290 61 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018054 [exp] 518 / 0 AT5G17990 514 / 0.0 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1) Lus10018053 [exp] 91 / 3e-22 AT2G21290 100 / 3e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082700 [exp] 443 / 9e-154 AT5G17990 538 / 0.0 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1) Potri.015G078801 [exp] 84 / 7e-19 AT5G17990 83 / 3e-19 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1) Potri.009G124700 [exp] 48 / 4e-07 AT2G21290 45 / 1e-07 unknown protein Potri.004G163100 [exp] 47 / 2e-06 AT2G21290 41 / 6e-06 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00591 [flax] [poplar] Glycos_transf_3 Glycosyl transferase family, a/b domain PF02885 [flax] [poplar] Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10042050 pacid=23153928 polypeptide=Lus10042050 locus=Lus10042050.g ID=Lus10042050.BGIv1.0 annot-version=v1.0 ATGGCGATATCAGTCGCCCCTGCAACTTCTTCTTCTTCTTCTCTGCTCATGCCCACTGACCGTTCCGGCCTTCGTTCAAATTCTCTAACTGTAAACCTTC CCGCCTCCCCTCTCCGCCTGCCGATTTGCTTCTCCAAACAGAGTAATCGAACGACTCCCATTTGCTGCCTGCCTACTGTTCCTGGAAATGCACCTGCACA ATCGTCGATTTCATTTAATGAGGTGATTGAGTCTTTGATCAATGGGGTTAATCTAACGGAATCTGAGGCCGAGGCGTCGCTGCATTTTTTGCTCGGTGAT GCTAGTGAGGCTTTGATAAGTGCTTTTCTTGTCTTGATGAGAGCAAAAGGAGAGACCTTTGAAGAGATTGTGGGACTGGCAAAGGCCATGCTCAGCCATG CTGAGAAGGTTGAAGGGTTGGGTGATGCAGTCGATATTGTTGGAACCGGTGGGGATGGAGCCAACACTGTCAACATTTCTACTGGAGCTTCGATACTCGC TGCTGCTTGTGGTGCAAAAGTGGCCAAGCAAGGGAGTCGTTCAAGTTCATCTGCATGTGGGAGTGCTGATGTACTAGAAGCGCTTGGGGTGGTGATTGAC CTGAGTCCAGAGGGAGTGGCGAGGTGTGTGAATGAAGTAGGAATTGGTTTTATGATGGCCCCAAGATACCATCCTGCTATGAAGGTTGTCAGGCCTGTAA GGAAAAAGCTTAAAGTGAAGACAATATTCAATATATTAGGCCCAATGCTGAATCCTGCAAGAGTACCTTATGCTGTTGTTGGTGTCTTCAATGAAGAACT GGTCCAGAAAATGGCTGGAGCTCTGCAACGTTTTGGAATGAAGAGGGCATTAGTAGTTCATTCGGAGGGCTTGGATGAAATAAGTCCTCTTGGACCTGGT ACAATCCTTGATGTAACTCAGCATGGAGTCGAAAAATTCTCATTTGACCCCTTGGAGTTTGGGATTCCCCGGTGCAGTTTGGAGGATTTGCGAGGTGGAG GCCCAGACTACAATGCGGATGCACTGAAGCGTGTGTTATCGGGAGAGATAGGGGCCATTGCAGATGCACTTATCTTAAATGCAGCAGCGTCCCTACTAGT AAGTGGCAAGGTTAAGTCTTTGAGGGAAGGAGTTGATCTGGCTCGAGAAATACAACGAGGCGGCGGGGCTGCGAGACGAATTGTCATGGCGGCGGCTCAG CAGCAGTCGTCATCTTTCTCGTCACTGGCACTAGTTTCTTCATCAGCAGCGTCAGGGTGCCCGATTCTGTGCGGTCGGGGTGACAAGAAGACGAAGAAAG GGAAGATATTCAAAGGCACGTACGGTAACTCGAGGCCGAAGAAGGAGAAGCAGATCGAGCGCATTAAGGACAAAAATGAGGTTCCCAGGTCCACTCCCTG GCCCCTCCCCTTCAAGCTCATCTGA
AA sequence Show only first row Show all	>Lus10042050 pacid=23153928 polypeptide=Lus10042050 locus=Lus10042050.g ID=Lus10042050.BGIv1.0 annot-version=v1.0 MAISVAPATSSSSSLLMPTDRSGLRSNSLTVNLPASPLRLPICFSKQSNRTTPICCLPTVPGNAPAQSSISFNEVIESLINGVNLTESEAEASLHFLLGD ASEALISAFLVLMRAKGETFEEIVGLAKAMLSHAEKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID LSPEGVARCVNEVGIGFMMAPRYHPAMKVVRPVRKKLKVKTIFNILGPMLNPARVPYAVVGVFNEELVQKMAGALQRFGMKRALVVHSEGLDEISPLGPG TILDVTQHGVEKFSFDPLEFGIPRCSLEDLRGGGPDYNADALKRVLSGEIGAIADALILNAAASLLVSGKVKSLREGVDLAREIQRGGGAARRIVMAAAQ QQSSSFSSLALVSSSAASGCPILCGRGDKKTKKGKIFKGTYGNSRPKKEKQIERIKDKNEVPRSTPWPLPFKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	0	1
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	2.2	0.8580
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	5.5	0.8165
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	7.5	0.8304
AT1G53800			unknown protein		Lus10037460 [exp]	8.9	0.7857
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10013343 [exp]	10.2	0.7837
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	19.4	0.7683
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	27.9	0.7511
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	30.0	0.7374
AT3G53540			unknown protein		Lus10025295 [exp]	32.0	0.7213
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	38.0	0.7502

Compare expression of checked genes

Lus10042050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.