Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21280 535 / 0 GC1, ATSULA GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 53 / 1e-07 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018055 [exp] 640 / 0 AT2G21280 536 / 0.0 GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124800 [exp] 555 / 0 AT2G21280 545 / 0.0 GIANT CHLOROPLAST 1, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G127500 [exp] 49 / 2e-06 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127400 [exp] 44 / 0.0001 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G093300 [exp] 43 / 0.0002 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.010G125400 [exp] 42 / 0.0004 AT1G68540 428 / 1e-151 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08338 [flax] [poplar] DUF1731 Domain of unknown function (DUF1731) CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10042051 pacid=23153877 polypeptide=Lus10042051 locus=Lus10042051.g ID=Lus10042051.BGIv1.0 annot-version=v1.0 ATGACTTTAATTATGGCCATCTCACCAAATTTCTGCTATGCATTACAGTTTCGTGGTTCAACCAGACTCAGGGTGTGGTGTGCTTCTGACCAAACTGGCA AGATGATTGTATCAGTGACTGGAGCTACAGGTTTCATTGGTAGAAGATTGGTGCAAAGACTCCAAGGAGATAATCATAGTGTTCATGTCTTGACACGATC CCGATCCAAAGCTGAGTTAATATTTCCGGTTAGGGACTTCCCAGGAATTGTGATTGCTGAAGAAGCAAAGTGGAAAGACTCCATTCATGGTTCCGATGCT GTTGTCAATTTGGCTGGAATGCCCATCACTGGAAGATGGTCTCCTGCGATCAAGAAAGAGATCAAAAACAGCAGAGTTAGAGTCACCTCAAAGGTTGTAG AGTTAATCAACAATTCGCCACAAGATGTTCGTCCTGCTGTTCTTATTAGTGCCACAGCAGTTGGTTACTACGGTACGAGTGAGACACAGGTTTTCGACGA GAGTAGTCCATCTGGAAATGATTATTTGGCTGAGGTGTGTAGAGAATGGGAAGAGACAGCATTCAAAGTAAACAAGGATGTGAGAGTAGCTCTTGTTCGC ATCGGCGTTGTTCTGGGGAAAGACGGAGGTGCTTTGGCCAAGATGATCCCTCTCTTCAAGATGTTTGCTGGAGGACCTTTGGGCTCTGGACAACAATGGT TTTCCTGGATTCACTTGGATGACATAGTCAACCTAATATATGAAGCTTTGGTAAATCCATCTTACAAAGGAGTCATCAATGGAACTGCACCGAATCCTGT ACGATTAGGCGAGATGTGCAACCAATTGGGAGGCGTGCTAGGCAGGCCATCATGGCTTCCAGTACCTGATTTCGCCCTGAAAGCAGTCCTTGGGGAAGGC GCAACTGTGGTGCTTGAAGGGCAAAAGGTAGTTCCTGTAAAGGCCAAGGAGTTGGGTTTCAGGTTCAAATATCCCTACGTGAAAGATGCTCTTAAAACCA TCCTGTGA
AA sequence Show only first row Show all	>Lus10042051 pacid=23153877 polypeptide=Lus10042051 locus=Lus10042051.g ID=Lus10042051.BGIv1.0 annot-version=v1.0 MTLIMAISPNFCYALQFRGSTRLRVWCASDQTGKMIVSVTGATGFIGRRLVQRLQGDNHSVHVLTRSRSKAELIFPVRDFPGIVIAEEAKWKDSIHGSDA VVNLAGMPITGRWSPAIKKEIKNSRVRVTSKVVELINNSPQDVRPAVLISATAVGYYGTSETQVFDESSPSGNDYLAEVCREWEETAFKVNKDVRVALVR IGVVLGKDGGALAKMIPLFKMFAGGPLGSGQQWFSWIHLDDIVNLIYEALVNPSYKGVINGTAPNPVRLGEMCNQLGGVLGRPSWLPVPDFALKAVLGEG ATVVLEGQKVVPVKAKELGFRFKYPYVKDALKTIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10035187 [exp]	2.4	0.9126
AT3G06670			binding (.1.2)		Lus10021547 [exp]	6.2	0.9270
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	6.2	0.9125
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	7.0	0.9041
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	11.7	0.9057
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016128 [exp]	15.9	0.8812
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	16.0	0.9102
AT5G56850			unknown protein		Lus10032679 [exp]	16.2	0.8884
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	16.4	0.9022
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	18.0	0.8826

Compare expression of checked genes

Lus10042051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.