Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14490 125 / 4e-33 FHA SMAD/FHA domain-containing protein (.1) AT3G02400 121 / 1e-30 FHA SMAD/FHA domain-containing protein (.1) AT5G19280 46 / 3e-05 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018056 [exp] 461 / 3e-164 AT3G02400 155 / 1e-43 SMAD/FHA domain-containing protein (.1) Lus10031083 [exp] 141 / 5e-39 AT4G14490 159 / 1e-45 SMAD/FHA domain-containing protein (.1) Lus10041216 [exp] 54 / 7e-08 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 52 / 4e-07 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 46 / 4e-05 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10008411 [exp] 44 / 5e-05 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1) Lus10034062 [exp] 44 / 0.0001 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10001966 [exp] 43 / 0.0001 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074900 [exp] 127 / 9e-34 AT4G14490 101 / 1e-23 SMAD/FHA domain-containing protein (.1) Potri.008G149700 [exp] 46 / 3e-05 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.010G091500 [exp] 44 / 8e-05 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.009G156900 [exp] 41 / 0.0004 AT2G21530 146 / 5e-44 SMAD/FHA domain-containing protein (.1) Potri.009G156700 [exp] 40 / 0.0008 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10042052 pacid=23153848 polypeptide=Lus10042052 locus=Lus10042052.g ID=Lus10042052.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGCCTTGGTTAGTGCTGTCAATACTGAAGGGACCTCGGGAGGGAGAAACCTTCGAATTCCGCCCCGGATCCACCGTCCGAATCGGCCGAC TCGTCCGGGGAAACACCTTCGCAATCAAAGACGCCGGCATCTCTTCCAAGCACCTCCTTATCATATCCGAATCCGGCGGCAAATGGACCGTCCAGGACCT CGATTCCTCCAACGGCACCACTCTCAACTCCTCCCCGCTCGCTCCTCTCCAACCTTCCGACCTAAGCGGTGGCGACCAGATCAAGCTCGGAGGGGTCACC TCCATGGCCGTCCAGTTCGTATTCAAAATCCAGAATCTGGAGCCGATCGATGCATCTGCTGCTGTTGCTGAGAACGTTCCGAAGAGAAGAGGGAGGCCGC CAAAACCTAGGGTGCCGGCCGAAAACACGGAGGCGCGTGTCACAAGAAGCATGAAGAAGGAAATCGAATGCTCTGAAGAATCGGGGATTCAATTGGAGAA AAAACGTCCGGCAGAAACGAGGAGAGGAAAGAAGAATTTGCCAGAAATTCCGGTGAAGAATCCTGATCCGGTTGTGGTGGAAATCAAGGAAGAGGCGGTA AGCTTCGTTGAAGAAGCTCGAGAAGGAGACGGGAATGGAGGAGTTGTTGACAGTAGTGCTGACAACATAAGACCAAGTGAAGCCATGGTAGGGGAAGGAA TGGAGATGAGTCAGAAATCGAATTCAGATGGACAAGTGCCGAAAACGAATGGCCATGGTGATTCAAGCAAGCGAAGAGGGGAAGAGAGTGAGGGAGAAGT AGAAGAAATGGTGGACCTGGAGAAGATGACTGCCAGGAAGTGGTTCGACTATATGGAAGTGCAGCTCCGTAAGCAAACAATGGAGGCTACGGAGAAGATC ATCGACGAAATGAGAAACAAAGCCGACCGAGTCAGAGAGTATGTAGCTGAGCAGAAGAGAAACAAGGGTATATCTTAA
AA sequence Show only first row Show all	>Lus10042052 pacid=23153848 polypeptide=Lus10042052 locus=Lus10042052.g ID=Lus10042052.BGIv1.0 annot-version=v1.0 MEEEPWLVLSILKGPREGETFEFRPGSTVRIGRLVRGNTFAIKDAGISSKHLLIISESGGKWTVQDLDSSNGTTLNSSPLAPLQPSDLSGGDQIKLGGVT SMAVQFVFKIQNLEPIDASAAVAENVPKRRGRPPKPRVPAENTEARVTRSMKKEIECSEESGIQLEKKRPAETRRGKKNLPEIPVKNPDPVVVEIKEEAV SFVEEAREGDGNGGVVDSSADNIRPSEAMVGEGMEMSQKSNSDGQVPKTNGHGDSSKRRGEESEGEVEEMVDLEKMTARKWFDYMEVQLRKQTMEATEKI IDEMRNKADRVREYVAEQKRNKGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10042052 [exp]	0	1
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	9.3	0.9401
AT5G48480			Lactoylglutathione lyase / gly...		Lus10020399 [exp]	11.1	0.9393
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	12.2	0.9361
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	15.6	0.9366
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	20.5	0.9269
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	23.7	0.9329
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10032379 [exp]	25.1	0.9342
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	32.7	0.9305
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	36.5	0.9277
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10014989 [exp]	37.1	0.8436

Compare expression of checked genes

Lus10042052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.