Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 389 / 1e-135 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 358 / 1e-123 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 331 / 5e-113 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 102 / 1e-23 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018057 [exp] 484 / 1e-172 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 305 / 4e-102 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 218 / 1e-68 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 172 / 8e-50 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 107 / 1e-25 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 104 / 2e-24 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163200 [exp] 417 / 1e-146 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 405 / 4e-142 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 338 / 5e-116 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.014G156300 [exp] 102 / 7e-24 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10042053 pacid=23153729 polypeptide=Lus10042053 locus=Lus10042053.g ID=Lus10042053.BGIv1.0 annot-version=v1.0 ATGGATATCATGGGACGTCCTTTGAACAGACTTACCGGTGTTACCCTGCCTCATTTATTGAGAAGCCTCAAATTGAAAGTGGTGATAAAAGTAGGTTTCT TTTGCAACATGGCTGAGTATTTGAGAATTCCTTTCTGTATTTTGTCATCTTTTCTCACCCTTCCCTTTCTTTACATTGTTACAGTTATAATGCCTCCTTC AGCACTTGATCGCCTTGCATCCCTGCATATTGATTATCCTATGCTGTTCGAGCTAAGAAATGATGCTGCTGAGAGAGTCTCTCACTGTGGGGTTCTCGAG TTCATTGCAGAAGAAGGCATGATCTACATGCCATACTGGATGATGGAGAATCTGCTCTTACAAGAGGGCGATATTGTGCGACTGAAGAATGTGACTCTTC CCAAAGGAACATATGTCAAGTTGCAACCTCATACAAAAGACTTCCTGGATATTACCAACCCAAAAGCCATCTTAGAGACGACATTGAGGAATTATTCTTG CTTGACAACTGGTGACAGTATTATGGTGGCATATAACAACAAAAAGTATTACATAGATATCATAGAATCGAAGCCCGCAAAGGCAATAACCATCATCGAG ACTGATTGTGAGGTGGACTTTGCTCCTCCTCTTGATTACAAGGAACCTGAGAGGCCTTCTGCATCTGTTCCCTTAGGCAAGGCTCCGTCTCAAGTGGAAG AGACTCCAGAAGAGGCGGTGCCGAAATTCAATCCATTCACAGGAGCAGGGAGACGTTTGGATGGTAAACCATTGCCGTACCAGCCTGCTCCAATATCAGC AGCACCTTCATCAAAAGACAAAAGCCCTGTTGCAGCCAGTAGCAGCAAACAGTCATCTCCTGCTGCTGGTAGTTCCAGTTCACCGAATACTTCGCGCCAA GCCCAGGGAAAGCTCGTGTTTGGATCGAATGCGAACCGCGCTCCAAAGGCAACACCGAAGGAAACTGGGAAAGAGCCTAAACAACAAGAGCAGGCAGAAA AGAAAGAGGAACCCAAGTTCCAGGCCTTCTCTGGGAAGAAGTACTCATTGAGGGGTTGA
AA sequence Show only first row Show all	>Lus10042053 pacid=23153729 polypeptide=Lus10042053 locus=Lus10042053.g ID=Lus10042053.BGIv1.0 annot-version=v1.0 MDIMGRPLNRLTGVTLPHLLRSLKLKVVIKVGFFCNMAEYLRIPFCILSSFLTLPFLYIVTVIMPPSALDRLASLHIDYPMLFELRNDAAERVSHCGVLE FIAEEGMIYMPYWMMENLLLQEGDIVRLKNVTLPKGTYVKLQPHTKDFLDITNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIESKPAKAITIIE TDCEVDFAPPLDYKEPERPSASVPLGKAPSQVEETPEEAVPKFNPFTGAGRRLDGKPLPYQPAPISAAPSSKDKSPVAASSSKQSSPAAGSSSSPNTSRQ AQGKLVFGSNANRAPKATPKETGKEPKQQEQAEKKEEPKFQAFSGKKYSLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	0	1
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	3.7	0.7959
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	6.7	0.7523
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10013463 [exp]	7.3	0.7776
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	8.1	0.7072
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	8.5	0.7298
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	16.4	0.6987
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	16.5	0.7569
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	20.9	0.7798
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	23.9	0.6982
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	24.2	0.7373

Compare expression of checked genes

Lus10042053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.