Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21250 519 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 507 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 206 / 1e-63 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 202 / 4e-62 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 189 / 2e-57 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT3G53880 182 / 1e-54 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G62420 182 / 2e-54 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 174 / 2e-51 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT1G59960 172 / 1e-50 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 169 / 1e-49 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018058 [exp] 597 / 0 AT2G21250 543 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 204 / 8e-63 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 202 / 3e-62 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10031162 [exp] 198 / 2e-60 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010884 [exp] 196 / 7e-60 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10027216 [exp] 194 / 5e-59 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 194 / 7e-59 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10012652 [exp] 194 / 7e-58 AT2G37770 441 / 4e-155 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10021491 [exp] 189 / 1e-57 AT2G37770 464 / 2e-166 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125100 [exp] 540 / 0 AT2G21250 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 204 / 5e-63 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 197 / 2e-60 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 195 / 1e-59 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 192 / 1e-58 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.001G125400 [exp] 187 / 2e-56 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.010G097800 [exp] 185 / 5e-55 AT2G37770 250 / 3e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G193100 [exp] 183 / 1e-54 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G144600 [exp] 181 / 1e-53 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 179 / 2e-53 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10042054 pacid=23153512 polypeptide=Lus10042054 locus=Lus10042054.g ID=Lus10042054.BGIv1.0 annot-version=v1.0 ATGTCTGATGAAGAAAATGAAATCACTGGATTGGGTCAAAAGGTCCATGAATTTGAGAACATCTCCGGCCCATTCGACGACAAAGGGGAATCAATCAAAA CATACGTCAAAACCGATTATAGAATGCCCAGTTCGTCAGTGAAGCAACCAAGTGCCTCCAAGCAAATCTCTTTTCCGATTAGTGATTTGGAACGAGAAAC AAGGATGTCGACGATCACACTGAACAATGGCTTGAAAATGCCTCTACTCGGTCTGGGAGTCTGGCGAATGGAAGGGAAAGAGATTAGGGACCTCATCCTT AACGCTATCAAGATCGGCTATCGCCATTTCGATTGTGCCGCTGATTATAAGAATGAAGCTGAAGTTGGGGAGGCACTTGCTGAAGCTTTCAAGACTGGAC TTGTCAAAAGGGAGGATCTTTTCATTACTACTAAGCTTTGGAATTCGGATCACGGCCATGTTCTCGAGGCTTGCAAAGACAGTCTGAAGAAGCTGCAGCT TGATTATCTGGATCTCTACCTTGTCCACTTTCCAGTTGCAACAAAGCATACTGGAGTTGGCACGACGTCTAGTGCTTTGGATGCCGAGGGAGTTCTGGAA ATAGACACAACCATAACTTTGGAAGCGACTTGGCATGACATGGAAGACCTGGTATCCAAGGGTTTAGCTCGAAGCATTGGTATCAGCAACTATGACATCT TCCTAACCAGGGATTGCTTAGCCTACTCGAAAGTGAAGCCAGCTGTGAATCAAATCGAAACTCATCCTTACTTTCAGCGTGAATCTCTCCTAAAGTTCTG TCTAAAGCACGGCATTTCAGTGACCGCTCACACCCCTCTCGGAGGCTCTCTGGCTAATACTGAATGGTTTGGCTCGGTATCCTGCTTGGACGATGCTATT CTCAAAAGTCTGGGTGAGAAGTACAAGAAGACAGCTGCTCAAATCGCTCTGAGGTGGGGGATTCAAAGAGAAACTGTTGTCATCCCAAAATCTTCAAAGG TTGAGAGGCTGAAAGAGAATTTCAAAGTTTTCGACTTCGAGCTGAGCAAAGAGGACATGGATCTGATCAAAGGAATGGACAGGAAGTACAGAACCAACCA ACCTGCCAAGTTCTGGGGGGTCGATCTCTATGCGTAG
AA sequence Show only first row Show all	>Lus10042054 pacid=23153512 polypeptide=Lus10042054 locus=Lus10042054.g ID=Lus10042054.BGIv1.0 annot-version=v1.0 MSDEENEITGLGQKVHEFENISGPFDDKGESIKTYVKTDYRMPSSSVKQPSASKQISFPISDLERETRMSTITLNNGLKMPLLGLGVWRMEGKEIRDLIL NAIKIGYRHFDCAADYKNEAEVGEALAEAFKTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTSSALDAEGVLE IDTTITLEATWHDMEDLVSKGLARSIGISNYDIFLTRDCLAYSKVKPAVNQIETHPYFQRESLLKFCLKHGISVTAHTPLGGSLANTEWFGSVSCLDDAI LKSLGEKYKKTAAQIALRWGIQRETVVIPKSSKVERLKENFKVFDFELSKEDMDLIKGMDRKYRTNQPAKFWGVDLYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10042054 [exp]	0	1
					Lus10016844 [exp]	7.3	0.7075
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	8.8	0.6220
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10024250 [exp]	15.8	0.7188
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	23.2	0.6115
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	27.7	0.6056
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	36.3	0.5979
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	42.4	0.5864
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	43.2	0.5611
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	69.2	0.5648
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	72.4	0.5515

Compare expression of checked genes

Lus10042054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.