Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16530 348 / 6e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT1G72590 340 / 4e-117 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G43840 75 / 5e-17 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 63 / 4e-11 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 61 / 1e-10 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018059 [exp] 328 / 1e-114 AT1G72590 190 / 4e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028371 [exp] 314 / 7e-107 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10041820 [exp] 266 / 4e-88 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10008951 [exp] 68 / 9e-13 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 66 / 1e-12 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 66 / 1e-12 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 54 / 7e-09 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163600 [exp] 400 / 2e-140 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.009G125200 [exp] 374 / 8e-130 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.016G110600 [exp] 67 / 8e-13 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 65 / 5e-12 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 64 / 1e-11 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 61 / 1e-10 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 59 / 7e-10 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 59 / 9e-10 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 58 / 2e-09 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10042055 pacid=23154013 polypeptide=Lus10042055 locus=Lus10042055.g ID=Lus10042055.BGIv1.0 annot-version=v1.0 ATGGAGTTTGGGATCGTGGGTATGCTGGAAGCTGCTTGGGTTGCAGGCATACTGCCATTGCTTATAGCTTCACTGCCTTTTGCTAAACTGCGTTGGTTTA ATGAACTTGTGCTGGGGTTTGCTAAGAGGGGAAAGATCATGCAAAACTCCCCTGCCTATAAGCTCACGGTTCCTCAAAGATTCTTCTGTCATTTCTACGT GGTGGGTGTGGTTTGGACAACGGTCTTGCTTTCTGCAACATGGATCTATGCAAGCAACACGGCAGCACTCATGAGATATGAGTTATGGCTTTCTGTTTTT CTACTTGTGTTAATGGAAGCTCAAGTCTTGAGAAGGCTTTTCGAGACCATATATGTCTTCAAGTATAGCCCCTCCGCTCGGATGCATATCTTTGGCTACA TCACTGGCTTATTCTTCTACACGGCAGCACCTCTATCATTATGCTCTCGATATGTGTCCGAGGTGTTCAAGTATGGTTCAGATGTGGTAACCTCGTCTAT TTTCGAAGGCAAAGGCTTCCAACTTGACTGGTGGGGATTTTTAAATCCTCTTTTGAAGTTTGGATGGTTGCCATGGATCGCTGCAGTTATAATTCTCTGG GGTTGGATCCATCAGCTTCGATGCCATGCGATTCTGGGATCGTTAAGAAGCCAAGGGAAGAAGTTGGATGAGTATGTTATCCCGTGCGGAGATTGGTTTG AACTTGTTTCATCTCCACACTATCTGGCTGAGATTGTTATATATGCTGCTTTTGTGGTTGCTACTGGGGGAAAAGACCTTACTATTTGGCTGCTCTTCGG ATTTGTGGTGGCTAATTTGGCCGTTGCAGCTGGAGAAACACACCAGTGGTATCTTCGCAAGTTCGACAGCTATCCAAGGAATCGTTTTGCAATCTTCCCC TTTGTTTATTGA
AA sequence Show only first row Show all	>Lus10042055 pacid=23154013 polypeptide=Lus10042055 locus=Lus10042055.g ID=Lus10042055.BGIv1.0 annot-version=v1.0 MEFGIVGMLEAAWVAGILPLLIASLPFAKLRWFNELVLGFAKRGKIMQNSPAYKLTVPQRFFCHFYVVGVVWTTVLLSATWIYASNTAALMRYELWLSVF LLVLMEAQVLRRLFETIYVFKYSPSARMHIFGYITGLFFYTAAPLSLCSRYVSEVFKYGSDVVTSSIFEGKGFQLDWWGFLNPLLKFGWLPWIAAVIILW GWIHQLRCHAILGSLRSQGKKLDEYVIPCGDWFELVSSPHYLAEIVIYAAFVVATGGKDLTIWLLFGFVVANLAVAAGETHQWYLRKFDSYPRNRFAIFP FVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	1.0	0.9450
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	2.2	0.9132
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	2.4	0.9182
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	3.5	0.9163
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	4.6	0.9168
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	7.7	0.8997
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	10.5	0.9020
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	11.0	0.9105
AT5G02640			unknown protein		Lus10023327 [exp]	12.0	0.8657
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	13.0	0.8817

Compare expression of checked genes

Lus10042055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.