Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21240 350 / 1e-121 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 328 / 2e-113 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2) AT5G42520 275 / 2e-91 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G35550 155 / 4e-46 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT1G14685 143 / 7e-41 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 141 / 5e-40 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G68120 138 / 6e-39 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018060 [exp] 572 / 0 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2) Lus10031078 [exp] 390 / 2e-137 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10035462 [exp] 365 / 5e-125 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10012389 [exp] 291 / 7e-98 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10024313 [exp] 290 / 1e-97 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10023543 [exp] 140 / 2e-39 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10040427 [exp] 140 / 2e-39 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2) Lus10019380 [exp] 45 / 4e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125300 [exp] 401 / 1e-141 AT2G21240 377 / 5e-132 basic pentacysteine 4 (.1.2) Potri.004G163700 [exp] 400 / 3e-141 AT2G21240 378 / 3e-132 basic pentacysteine 4 (.1.2) Potri.005G235900 [exp] 293 / 2e-98 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.002G026700 [exp] 286 / 4e-96 AT5G42520 439 / 2e-155 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Potri.012G040700 [exp] 148 / 7e-43 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.015G032900 [exp] 147 / 3e-42 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 144 / 2e-41 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.010G101400 [exp] 144 / 2e-41 AT1G14685 300 / 1e-102 basic pentacysteine 2 (.1.2.3) Potri.008G140200 [exp] 144 / 3e-41 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.012G040600 [exp] 141 / 4e-40 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [flax] [poplar] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Lus10042056 pacid=23153578 polypeptide=Lus10042056 locus=Lus10042056.g ID=Lus10042056.BGIv1.0 annot-version=v1.0 ATGGATGACGGCGAGCAGCATCAAAACGGCAGGTGCAAGGATTATTACAAGGCAGCACATAATCCGTGGAATATAACGCCACAGCATCAATCAAAGGAAC AACAGCCGAACGCCTTGGTAATGAACAAGAAGATCCTGAGCATCCTTGCCGAGAGGGATGCCGCCATTCAAGAGCGAAACATAGCCTTAGCTGAGAGAAA AGAAGCCTTGGTAGCACGAGACGAAGCGATCCTGCAACGAGAACAAGCCCTCGCTGAGAGGGATATAGCCCTGAGGGAACGAGACAAAGCCTTTGCAGCT ATGCAATATCGAGAATCTTCGATGAACTACTCAGCCAAGCGCATTCCTCATCCCGTGTACCGCTCTTTGAATGATTCTGAAGTAACCAACATGGATGCCC TTCCGATAACGACGATTCCTGCTGGCAAACCACCAAAGCGATCGAAAAAGGCAAACAAATCGCCACGGAAAGGGAACAACAAATCCGTAGGGGAGGATCT GAACAGAGTAGTAGTTCGCGTGACCGAAGGAAGGAAGTTCAAAACGGAATGGGACACGCTGGATGTCGGGTTGAACCTGATAAGCTACGACGAAGCGACA ATGCCGGCACCGGTCTGCTCCTGCACTGGAACAGCCCACCAATGCTACAAATGGGGGAACGGCGGGTGGCAATCTTCGTGCTGCACGACCACAATGTCGT GCCATCCGCTTCCTCAGCTTCCGAACAAACGTCACGCAAGAGTTGGGGGGCGGAAGATGAGCGGGAGTGTGTTCACGAAGCTGCTGAGTAGACTAGCTGG AGAAGGGCATGATCTGGCGGTACCTATTGATCTCAAGGACTACTGGGCTAGACATGGAACGAATCGATACATCACCATAAAGTAG
AA sequence Show only first row Show all	>Lus10042056 pacid=23153578 polypeptide=Lus10042056 locus=Lus10042056.g ID=Lus10042056.BGIv1.0 annot-version=v1.0 MDDGEQHQNGRCKDYYKAAHNPWNITPQHQSKEQQPNALVMNKKILSILAERDAAIQERNIALAERKEALVARDEAILQREQALAERDIALRERDKAFAA MQYRESSMNYSAKRIPHPVYRSLNDSEVTNMDALPITTIPAGKPPKRSKKANKSPRKGNNKSVGEDLNRVVVRVTEGRKFKTEWDTLDVGLNLISYDEAT MPAPVCSCTGTAHQCYKWGNGGWQSSCCTTTMSCHPLPQLPNKRHARVGGRKMSGSVFTKLLSRLAGEGHDLAVPIDLKDYWARHGTNRYITIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	0	1
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	1.4	0.7950
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	2.0	0.7793
AT2G47640			Small nuclear ribonucleoprotei...		Lus10013840 [exp]	8.7	0.7843
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	10.4	0.7363
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	10.5	0.7642
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	13.4	0.7938
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	16.0	0.7342
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041334 [exp]	17.7	0.7255
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	21.6	0.6998
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	23.7	0.6928

Compare expression of checked genes

Lus10042056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.