Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 385 / 7e-128 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 304 / 1e-96 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G40620 140 / 8e-37 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 139 / 9e-37 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G31370 134 / 1e-34 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 132 / 2e-33 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G43700 119 / 1e-29 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G12940 103 / 3e-24 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 99 / 7e-23 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G13150 98 / 1e-22 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018061 [exp] 761 / 0 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012390 [exp] 301 / 1e-96 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10024314 [exp] 298 / 2e-95 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 270 / 1e-84 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10033174 [exp] 261 / 3e-81 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 175 / 3e-51 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 153 / 3e-43 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10008605 [exp] 137 / 7e-36 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 136 / 1e-35 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163800 [exp] 535 / 0 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.009G125400 [exp] 526 / 0 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.013G091400 [exp] 144 / 3e-38 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 144 / 6e-38 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G130000 [exp] 143 / 2e-37 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 141 / 2e-37 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 139 / 8e-37 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 129 / 2e-32 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 126 / 2e-31 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 72 / 2e-13 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10042057 pacid=23153649 polypeptide=Lus10042057 locus=Lus10042057.g ID=Lus10042057.BGIv1.0 annot-version=v1.0 ATGGGTGATACGGAAGAAGGGAGCACTGATGTGATGCAGCGATTGCAGTCGTCGTTCGGGACAAATCAGTCATCGACGTCGTCTTCAATGCTGAAGCAGC TGCCGTTTTCATCATCACCAAGGCAGATTGATATCCCACCTTTGAGTCAAAATCAAATGCGAGCTAGGCATTTTGCTCACTTTGCTCAACAGCAAGGTTT TAGCGGCGGCGGTGGTGATAGCAACAGCAATAATAACAAAAGAGCTGGGATTCCGCCTTCACATCCGAACCAGATCACACCGATTTCTCCCTTCTCTCAG ATCCCGGTGTCTACCAGGCCAGTCAACCACCACCAAATGGGGTCTTCTCAGAGTTTCAATACTACCAACAAGCCTGGCCATTCTCGATCTTTATCACAAC CATCCTCGTTTTTCTCGCTTGATTCTCTTCCACCTTTAAGTCCTGCATCATTCAGAGACCATTCACCAACTTCTGAAACTGATGCTTCCATGGAGGTGGA TAGGGATGGGAACTATCATTCCGTGTTGCCACCGTCTCCTTATAGTAGGTCCTCCTCAATTGCTCCTCGTGTTGGTGAGAGTTTACCACCGAGGAAGGCT CATAGACGGTCCAATAGTGATATACCGTTTGGGTTTAGTACTGTGATGCAGTCTTCTCCACCACTGAAATTTGGTAACAAGCTAGCTCAGGTGGTTAAAA ATGAAGAAGGGATGGGTGAGAGGAAACCCGAAGGTGAAGCCATGGATGATTTGTTCTCGGCGTATATGAATCTGGATAACTTCGACTCGTTGAATTCGTC AGGGACTGATGACAAGAATGGGAACGAGAATCGCGAGGATTTGGATAGCAGGGCGAGTGGAACCAAGACGAATGGTGGTGATAGCAGTGATAATGAGGCG GAGAGCAGCATTAACGAGAGTGGGAGTAGCATTCCAAGGAGGGAAGGGACTAAAAGGAGTGCTGAGGGGGATATTGCTCCAACTTCAAGACATCACAGAA GTGTTTCCTTGGATAGTTTCATGGGGAAGTTGAACTTTGGAGGTGATGAGTCCCCAAAGCTTCCCCCTTCGCCTGGTCCTCGTCCTGGACAGTTGTCTCC GACTAGCTCGATCGATGGGAGTGCCTTTAGCTTGGATTTTGGGAATGGGGAGTTCAACAGTGTTGAGCTGAAGAAAATTATGGCAAATGAGAAACTCACT GAGATTGCTTTAACTGATCCAAAGCGTGCAAAGAGAATTTTGGCGAACCGTCAGTCTGCTGCTCGGTCAAAAGAAAGGAAGATGAGATACATATCGGAAC TTGAACACAAGGTTCAGACTCTTCAGACTGAAGCTACTACATTGTCTGCCCAGCTTACTCTTTTACAAAGAGATTCACTTGGACTCACGAATCAGAATAA CGAACTAAAATTTCGTCTACAAGCCATGGAGCAACAGGCACAACTTCGGGATGCTCTGAATGAAGCTTTGACTGCTGAGGTTAGACGACTGAAGATAGCA ACAGCGGAAATTAGCGAGAACAGTGCAGATCCATCAAAAGGTAGCCAGCACCATACTTCTGCAAACTCTCAAATGTTCCAGCAGCAGCAGCAAATGTCAT CTCAATGCAACATGAACCAATTGCAGCAGCAGCAGCATGAACAACGAAACGGAACAAACTCGAAAGCAGAAGCAAACCAGTGA
AA sequence Show only first row Show all	>Lus10042057 pacid=23153649 polypeptide=Lus10042057 locus=Lus10042057.g ID=Lus10042057.BGIv1.0 annot-version=v1.0 MGDTEEGSTDVMQRLQSSFGTNQSSTSSSMLKQLPFSSSPRQIDIPPLSQNQMRARHFAHFAQQQGFSGGGGDSNSNNNKRAGIPPSHPNQITPISPFSQ IPVSTRPVNHHQMGSSQSFNTTNKPGHSRSLSQPSSFFSLDSLPPLSPASFRDHSPTSETDASMEVDRDGNYHSVLPPSPYSRSSSIAPRVGESLPPRKA HRRSNSDIPFGFSTVMQSSPPLKFGNKLAQVVKNEEGMGERKPEGEAMDDLFSAYMNLDNFDSLNSSGTDDKNGNENREDLDSRASGTKTNGGDSSDNEA ESSINESGSSIPRREGTKRSAEGDIAPTSRHHRSVSLDSFMGKLNFGGDESPKLPPSPGPRPGQLSPTSSIDGSAFSLDFGNGEFNSVELKKIMANEKLT EIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSLGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVRRLKIA TAEISENSADPSKGSQHHTSANSQMFQQQQQMSSQCNMNQLQQQQHEQRNGTNSKAEANQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10042057 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	4.0	0.8290
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	6.3	0.8208
AT1G03910			unknown protein		Lus10030000 [exp]	13.3	0.7788
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	16.3	0.7902
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	18.8	0.8023
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	19.6	0.8103
					Lus10023092 [exp]	20.6	0.7636
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	21.2	0.7907
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	24.3	0.8093
AT3G11760			unknown protein		Lus10013598 [exp]	25.2	0.7663

Compare expression of checked genes

Lus10042057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.