Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 824 / 0 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 813 / 0 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 686 / 0 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT3G24090 49 / 8e-06 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035459 [exp] 883 / 0 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018063 [exp] 263 / 1e-85 AT4G34740 195 / 1e-60 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10018062 [exp] 262 / 2e-85 AT4G34740 196 / 6e-61 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10020198 [exp] 50 / 5e-06 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164000 [exp] 858 / 0 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.009G125600 [exp] 856 / 0 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.019G054500 [exp] 52 / 8e-07 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain CL0052 [flax] [poplar] NTN PF00310 [flax] [poplar] GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence Show only first row Show all	>Lus10042058 pacid=23153709 polypeptide=Lus10042058 locus=Lus10042058.g ID=Lus10042058.BGIv1.0 annot-version=v1.0 ATGGCTGCCAACGCCTCCACCACCACCTTGGCCGCCGCCGCCACCATCTCCAAACAGTCAGTTTCATCGCTGCCGTCCAAATGGCCCTCCTTGCCTTACA AATCCAGTGTTTTCCTTCCCCCAACACCCAAAACCCTCCATAAACCCTCCTCCGCCGCCGCCGCCTCCCTCTCCCAAACCCGCAGCCCGACCTGCCTCTC CGCAGCTTCTCCTCATAGGAGCGAAGATCTCCCCCTCGATCCTTGCTATTACGATGAACTCGACGAGAAGCCACGCGAGGAGTGCGGCGTGGTGGGCGTC TACGGCGACCCGGAAGCCTCTCGACTCTGCTACCTCGGCCTCCACGCCCTGCAGCACCGCGGCCAGGAAGGCGCCGGAATCGTCTCCGTCAACAACGAGG TATTTCACTCCGTCACCGATGTTGGCCTAGTCACTGATGTCTTTAACGAGTCCAAAATCAATCAATTGCCCGGCGACATGGCAATAGGCCATGTCCGATA TTCCACCGCCGGCGCATCCATGCTCAAAAACGTTCAGCCCTTCGTTGCGGGTTACCGATTCGGCTCCGTCGGAGTCGCGCACAACGGCAATTTCGTCAAC TACAAAAAAATTAGGGCGGAGCTTGAAGACAGCGGCTCAATCTTCAACACCAGCTCTGATACAGAAGCTGTTCTCCACTTGATCGCCACTTCCAAGGACA GGCCGTTCCTCTCCAGAATCGTCGACGCCTGCGAGCGAATCCAAGGGGCTTATTCAATGGTGTTCGTCACAGAGGATAAACTCGTCGCCGTAAGAGATCC TCACGGATTCCGTCCATTAGTCATGGGAAGGAAGAGCAATGGCGCTGTAGTGTTCGCTTCCGAGACCTGCGCTCTCGATTTGATCGACGCTACTTACGAA AGAGAAGTCAATCCGGGAGAAGTCGTCGTGGTTGACAAAGATGGAATCTCTTCACTCTGCTTGCTAATGACTCGCCATCACGAGCCTAAGCAGTGTACAT TCGAACACATATACTTCGCTCTCCCGCAATCTGTTGTGTTTGGCAGGTCTGTTTACGAATCGAGACGCTTATTCGGAGAGATTCTCGCTACCGAATCGGG AGTCGATTGTGATGTTGTGATTGCTGTTCCGGATTCCGGAGTCGTTGCAGCTCTCGGCTATGCAGCGAAAGCCGGTGTTCCATTCCAGCAGGGGCTAATT CGGTCACATTACGTTGGGAGAACGTTCATCGAGCCGTCTCAGAAGATTCGCGATTTCGGCGTGAAGCTGAAGCTATCTCCAGTTCGAGAGATCCTCGAAG GGAAAAGAGTTGTGGTAGTTGACGATTCGATTGTGAGAGGGACGACTTCCTCGAAAATCGTTAGGATGCTGAAGGAAGCCGGAGCGAAAGAGGTCCACAT GAGGATTGCTAGTCCTCCGATTATCGCGTCGTGTTACTCCGGAGTCGATACTCCAAGCTCCGAAGAGCTGATATCGAACAGAATGGGCGTGGAGAAGATT CGGGGCTTCATCGGGTGCGATTCGCTAGCGTTCTTGTCGTTTGATAGTTTGAAGAGGTTGCTGAAGGAGGATTCTCCGAACTTCTGCTATGCTTGCTTCT CGGGGGACTACCCGGTGCTGCCACCGAGTGAGGATAAGGTGAAGCGAGTTGGTGATTTTGTTGATGATGGTTTGAATGGTAGCGTGGACTCCATTGATGG CGGGTGGGTTCAAGGTGTGAAAGTTGAGAAGGAAACGGATGAGGACCGGTCGTTGTCTACTACATTGGCAAGTTAG
AA sequence Show only first row Show all	>Lus10042058 pacid=23153709 polypeptide=Lus10042058 locus=Lus10042058.g ID=Lus10042058.BGIv1.0 annot-version=v1.0 MAANASTTTLAAAATISKQSVSSLPSKWPSLPYKSSVFLPPTPKTLHKPSSAAAASLSQTRSPTCLSAASPHRSEDLPLDPCYYDELDEKPREECGVVGV YGDPEASRLCYLGLHALQHRGQEGAGIVSVNNEVFHSVTDVGLVTDVFNESKINQLPGDMAIGHVRYSTAGASMLKNVQPFVAGYRFGSVGVAHNGNFVN YKKIRAELEDSGSIFNTSSDTEAVLHLIATSKDRPFLSRIVDACERIQGAYSMVFVTEDKLVAVRDPHGFRPLVMGRKSNGAVVFASETCALDLIDATYE REVNPGEVVVVDKDGISSLCLLMTRHHEPKQCTFEHIYFALPQSVVFGRSVYESRRLFGEILATESGVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLI RSHYVGRTFIEPSQKIRDFGVKLKLSPVREILEGKRVVVVDDSIVRGTTSSKIVRMLKEAGAKEVHMRIASPPIIASCYSGVDTPSSEELISNRMGVEKI RGFIGCDSLAFLSFDSLKRLLKEDSPNFCYACFSGDYPVLPPSEDKVKRVGDFVDDGLNGSVDSIDGGWVQGVKVEKETDEDRSLSTTLAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	0	1
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	2.2	0.9169
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	4.0	0.9403
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	6.0	0.9186
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	10.9	0.9242
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	11.7	0.9068
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	12.5	0.9172
AT1G79150			binding (.1)		Lus10034234 [exp]	13.3	0.9048
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	17.1	0.9071
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	18.5	0.8791
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	21.0	0.8999

Compare expression of checked genes

Lus10042058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.