Plant FIBer expression Database

Lus10042059 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01130 41 / 6e-06 unknown protein
AT5G15320 40 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018064
[exp]
48 / 2e-08 AT5G15320 71 / 9e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G125832
[exp]
43 / 2e-06 AT3G01130 55 / 2e-12 unknown protein
Potri.004G164066
[exp]
42 / 2e-06 AT3G01130 55 / 2e-12 unknown protein
Potri.002G024900
[exp]
38 / 8e-05 AT5G15320 76 / 1e-20 unknown protein
Potri.005G236500
[exp]
37 / 0.0004 AT5G15320 36 / 9e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10042059 pacid=23153791 polypeptide=Lus10042059 locus=Lus10042059.g ID=Lus10042059.BGIv1.0 annot-version=v1.0
ATGTCTGCAATTTCTCGTCTCCCAGTCCAGAAAAGCTCTCTCCCTCTCCGACTGCTTTGTGAGAAACCCTCGATCGCAAGGCTTTTCCATACCGACGGAC
GAGCGAATCAAATCTCAACAAAAATGCCGCCTCCTCCTCCTGGACCTTACTCCGGCACCAGCACTCTTGCTCTGGTGGCTCGTGTAGCGGCGTTTACCAC
TGGTCTCGTCTATGGCAACTTGAAGCTCAAGTATCTCAAGCTACTAGAGAATCAGATTGTTGGCAGTTTGAAATTCTTGTGTCCGCAATATCGGTTCCCT
GAACATGCAGCCAAGGCGTGGTTTCTGATGGAATTGATTATTGTGTCCTTTCAGATCTTCTGTTCCGTGCTATGTGAAGTTTGA
AA sequence
>Lus10042059 pacid=23153791 polypeptide=Lus10042059 locus=Lus10042059.g ID=Lus10042059.BGIv1.0 annot-version=v1.0
MSAISRLPVQKSSLPLRLLCEKPSIARLFHTDGRANQISTKMPPPPPGPYSGTSTLALVARVAAFTTGLVYGNLKLKYLKLLENQIVGSLKFLCPQYRFP
EHAAKAWFLMELIIVSFQIFCSVLCEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01130 unknown protein Lus10042059
[exp]
0 1
AT1G67785 unknown protein Lus10042077
[exp]
1.0 0.8999
AT3G07570 Cytochrome b561/ferric reducta... Lus10012305
[exp]
5.0 0.8640
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Lus10033224
[exp]
7.7 0.8615
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Lus10033342
[exp]
8.7 0.8687
AT5G49510 PFD3, PDF3 prefoldin 3 (.1.2) Lus10017066
[exp]
16.1 0.8928
AT5G61970 signal recognition particle-re... Lus10032538
[exp]
16.3 0.8888
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Lus10034796
[exp]
17.1 0.8675
AT1G54650 Methyltransferase family prote... Lus10006576
[exp]
17.3 0.8922
AT4G11260 RPR1, ETA3, EDM... ENHANCER OF TIR1-1 AUXIN RESIS... Lus10027540
[exp]
18.8 0.8830
AT4G28360 Ribosomal protein L22p/L17e fa... Lus10037603
[exp]
19.4 0.8841

Lus10042059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.