Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35910 509 / 3e-175 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G34730 248 / 8e-78 ribosome-binding factor A family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018066 [exp] 800 / 0 AT4G35910 522 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018065 [exp] 362 / 2e-121 AT4G34730 270 / 9e-93 ribosome-binding factor A family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051300 [exp] 553 / 0 AT4G35910 528 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.004G164200 [exp] 258 / 2e-81 AT4G34730 266 / 1e-90 ribosome-binding factor A family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0494 [flax] [poplar] DnaA_N PF02033 [flax] [poplar] RBFA Ribosome-binding factor A CL0494 [flax] [poplar] PF10288 [flax] [poplar] CTU2 Cytoplasmic tRNA 2-thiolation protein 2
Representative CDS sequence Show only first row Show all	>Lus10042060 pacid=23153780 polypeptide=Lus10042060 locus=Lus10042060.g ID=Lus10042060.BGIv1.0 annot-version=v1.0 ATGGCTTGCGATCCCGCCGGTTGCCAATCCACTTGCTATCAGAACGAACAATCTGTCGAAGAAAACTCGACTCCAGCTCCAACTAGCGGCCACAGCAATG GTGGCCAGCAGCAGGTCATGTGCCTTAAGTGCAAGGTTAACCCCCCAATTTTCAGTGGAGGCAGCGGCGACGACGCGCGCTTCTGCGGGGACTGCTTCAG GAATAATTTATTCGGGAAATTTCGGCTTGCAGTTACTTCCCACGCCATGATTACTCCTTCAGACAACGTGCTTGTGGCTTTCTCCGGTGGCGTTGGTTCC AGAGTGGCTCTGCAATTTGTGCATGATATGCAGCAGAGAGGACTGAAAAACTATGAAGCGAGCAAGGATAGGTCATTGTCCGTCTTTGGTGTTGGAGTGG CATTTGTTAATGAAAGTGCTGTTCGTTCAATTCCCACGGATAAGGTTGAGGAAGCAATTCAGGAGATGAAAATGACAGTGTCAAAGCTTGCTCCACCAGT GAAGCAGTTTCATGTTGTTCTACCTGAGAGCGTATATTCTTCGAGTTCAAGTGATGACAAAGACAAATTGATGAAGTTACTAGGTGCTGTTAATGATACC ACTGGAAAGGAGGATCTTTTATTGCATTTGAGGATGTTGGCATTGCAAAAAGTTGCTTCTGAAAATGGATACACTAAACTTGTTCTTGGTTTGTGCACCT CAAAGATTGCTTGCCATGTACTTGCTGCAACAGTGAAGGGCCAAGGATATTCTCTATCAGCCGACATACAACATGTTGATGCAAGAAGCGAAATCCCTGT GGTTCTTCCACTTCGCGACTGTACTGCACAGGAGCTTAACATTCTTTGCCGTATTGATGGTTTAAACACGTTGCAGTTGGTTAATGATTCACCCTCTGGC ATCAATGGTTTGATTGCTTCATTTGTACGCCTGTTGCAGGAAGAGAACCCTTCTCGGGAGTGTACCATAGTCCGAACAGCTGCGAAGCTCACTCCGTTTC ATTTCAATAGAATCCCTGAGATCAATGATTCAAATGTTCCTTTGGCAATGCGAAGGAGGCAAAAGAGATACAACCTCAAGCCACATGAATCTATTTCCTC GGAGTCATTCTGCCCTATCTGCAATAGCCCAGTTAATAGGCCAAGTCAAAACAACTCGAAGGGCTCCCAAATCACAGAGTTTGCTGCGTGCTGTTGTTCA AGCTGTCAGTTTCAGATACTGCCTCAGGATCAGTCGTCAATGAAACAATTCTACTCCGTTTTACCAGAAAGAATAGTTTCCCGAGCTAAGCCCCAAGGCA ATGGTAACCTGGACATGCTAAGGCAGAAAGCTGGTCAGAGCAATGAAGTTAACAACACTTCATCAACGAATTCTGCCAAAAGTCCAGAAAGAAACGCCAC GCGAGAGAGACTGCAGAGTACCGAGCATATCCGAGAGAAGCAAAACACCGCCGGCGGGGATCTCCGCATTCAATCTATACCTTCTACTGCAATGCTCCAA CTACACCTTCACCATCTCCATCTTCGTCCACAGCAGCCGCTCCTCTTCCGCTCCCCAAACTCCTCCGCCTGCTTACTGCCGATTGCAAATGTAAATCCGA CGCATCGACGACCGAAGCCGTTGATCGGAGCTAGAACCGTCCGGTGCATGGCCAGTCCGAGGAGAGTGAAGATGGTGGCGAAGCAGATTCAGAGAGAAAT CTCCGACATGCTTTTGACGGATAAGGTCTTGCAGTACGCGATTCTCCCTGAAGCTGCCTTGGGAGCTGATAGGTATCTTTCCTCCATTACCACCATCAGC GACGTTGAAGTCTCCGGCGACTTGCAGGTGGTTAAAGTATATGTATCTGTATTTGGAGACGATAGAGGGAAGGAAGTTGCTCTTGCTGGGCTAAAATCAA AGGCCAAATACGTAAGAGGTCAGTTGGGGAAACGAATGAGGTTGCGCCTGACTCCAGAGGTGCGGTTTCTCGAAGATGAAGCCATCGAGAAAGGAAGCAG GGTACTTGCAATACTAGACAAGATAAAGTCAGAGAAAGAAACTGCCCAAAATAAGAACGAAAACAACCCCGAATCATCTGGCTCGGCTGAAGATGATGAC GATTGGGAGGATGATGATCCTGAAGAAGGGATTATCTACGTAGACTAA
AA sequence Show only first row Show all	>Lus10042060 pacid=23153780 polypeptide=Lus10042060 locus=Lus10042060.g ID=Lus10042060.BGIv1.0 annot-version=v1.0 MACDPAGCQSTCYQNEQSVEENSTPAPTSGHSNGGQQQVMCLKCKVNPPIFSGGSGDDARFCGDCFRNNLFGKFRLAVTSHAMITPSDNVLVAFSGGVGS RVALQFVHDMQQRGLKNYEASKDRSLSVFGVGVAFVNESAVRSIPTDKVEEAIQEMKMTVSKLAPPVKQFHVVLPESVYSSSSSDDKDKLMKLLGAVNDT TGKEDLLLHLRMLALQKVASENGYTKLVLGLCTSKIACHVLAATVKGQGYSLSADIQHVDARSEIPVVLPLRDCTAQELNILCRIDGLNTLQLVNDSPSG INGLIASFVRLLQEENPSRECTIVRTAAKLTPFHFNRIPEINDSNVPLAMRRRQKRYNLKPHESISSESFCPICNSPVNRPSQNNSKGSQITEFAACCCS SCQFQILPQDQSSMKQFYSVLPERIVSRAKPQGNGNLDMLRQKAGQSNEVNNTSSTNSAKSPERNATRERLQSTEHIREKQNTAGGDLRIQSIPSTAMLQ LHLHHLHLRPQQPLLFRSPNSSACLLPIANVNPTHRRPKPLIGARTVRCMASPRRVKMVAKQIQREISDMLLTDKVLQYAILPEAALGADRYLSSITTIS DVEVSGDLQVVKVYVSVFGDDRGKEVALAGLKSKAKYVRGQLGKRMRLRLTPEVRFLEDEAIEKGSRVLAILDKIKSEKETAQNKNENNPESSGSAEDDD DWEDDDPEEGIIYVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	0	1
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	2.2	0.9078
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	3.5	0.8933
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	4.5	0.8810
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	4.9	0.8835
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	6.5	0.8547
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	8.5	0.8845
AT5G11480			P-loop containing nucleoside t...		Lus10022126 [exp]	8.8	0.8633
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	12.6	0.8492
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	14.5	0.8287
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	18.5	0.8001

Compare expression of checked genes

Lus10042060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.