Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13630 664 / 0 ABAR, CHLH, CCH1, GUN5 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018067 [exp] 566 / 0 AT5G13630 615 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2) Lus10018068 [exp] 185 / 1e-52 AT5G13630 926 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051100 [exp] 719 / 0 AT5G13630 2528 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11965 [flax] [poplar] DUF3479 Domain of unknown function (DUF3479) PF02514 [flax] [poplar] CobN-Mg_chel CobN/Magnesium Chelatase
Representative CDS sequence Show only first row Show all	>Lus10042061 pacid=23153634 polypeptide=Lus10042061 locus=Lus10042061.g ID=Lus10042061.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTGCTGTCTTCTTCTTTCACTATCTCATCATCAAAGCCAGACCAGCTCTCCCAAAAGCACTACTTCCTCCACTCATTTCTCCCCAAGAAGA TAACAAACCCATCATCAACCTCACCCAACTCCTCCAAACCGCCATTGATGAAGTTCAAATGCTCAGCAATCGGAAACGGGCTATTCACTCAGACCAGCCA AGAAGTCCGACGAATTGTCCCAGACAACAACGACTCTAACCTCCCCAGGGTCAAAATCGTCTACGTCGTCCTGGAAGCTCAGTACCAATCCTCACTCTCA GCAGCAGTCCAGTCCCTCAACAGGGAATCCAACAAGTTCGCTTCTTTCGAGGTGGTCGGCTACTTAGTCGAGGAGCTACGCGACAAATCCACTTATGAAA CCTTCTGCAAAGACCTGGAAGACGCCAACGTCTTCATCGGCTCCTTAATCTTCATAGAGGAGCTTGCCCTGAAAGTCAAATCCGCCGTGGAGAAAGAGAG GGACCGACTAGACGCCGTTTTGGTGTTCCCTTCGATGCCGGAAGTAATGAGGCTCAACAAGTTGGGATCTTTCAGCATGTCCCAGCTTGGTCAATCCAAA TCCCCCTTCTTCCAGCTCTTCAAGAAGAAGAAACAAGGTGCAGGATTTGCAGACAGTATGTTGAAATTGGTCAGAACTTTACCCAAAGTGTTGAAGTACT TGCCGAGTGACAAAGCTCAGGATGCCAGGCTGTACATCTTGAGTCTCCAGTTCTGGCTCGGAGGCTCTCCTGACAACCTGCAGAATTTTGTCAAAATGAT TTCTGGTTCTTACATTCCTGCACTGAAGGGGACACAGATTGAATATTCTGATCCTGTTCTGTTTCTGGATACTGGAATCTGGCATCCTTTGGCTCCTTGT ATGTTTGATGATGTGAAGGAGTACTTGAACTGGAGGGTTGGATTTCTCGGGGCCGGTGGAGAAGTACTTTGTCGATCCGGTGACGAAGCAGCCGATGGTG GACTCGTGGTGAACTCGGTGGTGTCGTTGACCGGGTTTGCACTCGTTGGTGGACCGGCGAGGCAGGATCATCCTAGAGCTGTGGAGGCTTTGATGAAGCT TGATGTGCCTTACCTTGTTGCTGTGCCTCTTGTGTTCCAGACTACCGAGGAGTGGTTGAATAGTACCTTGGGGCTTCATCCTATTCAGGTGGCTCTGCAG GTTGCTCTCCCTGAGCTTGATGGTGGTATGGAGCCTATTGTCTTCGCCGGCCGCGATCCCAGATCAGGAAAATCACATGCTCTTCACAAGAGGGTGGAGC AGTTGTGCACTAGAGCAATCAGATGGGGTGAGCTGAAGAGGAAGTCTAAGATAGCAAAGCAAATGAACATTAACTCAACAACCCTTGGCAAGTGGACAAC TGGGTGTATGAAGAGGCCAACACAACCTTCATCAAGGACGAGGAGATGCTGA
AA sequence Show only first row Show all	>Lus10042061 pacid=23153634 polypeptide=Lus10042061 locus=Lus10042061.g ID=Lus10042061.BGIv1.0 annot-version=v1.0 MASLLSSSFTISSSKPDQLSQKHYFLHSFLPKKITNPSSTSPNSSKPPLMKFKCSAIGNGLFTQTSQEVRRIVPDNNDSNLPRVKIVYVVLEAQYQSSLS AAVQSLNRESNKFASFEVVGYLVEELRDKSTYETFCKDLEDANVFIGSLIFIEELALKVKSAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSK SPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFVKMISGSYIPALKGTQIEYSDPVLFLDTGIWHPLAPC MFDDVKEYLNWRVGFLGAGGEVLCRSGDEAADGGLVVNSVVSLTGFALVGGPARQDHPRAVEALMKLDVPYLVAVPLVFQTTEEWLNSTLGLHPIQVALQ VALPELDGGMEPIVFAGRDPRSGKSHALHKRVEQLCTRAIRWGELKRKSKIAKQMNINSTTLGKWTTGCMKRPTQPSSRTRRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	1.0	0.9904
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	2.0	0.9825
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	2.2	0.8982
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	2.4	0.9411
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	3.5	0.9256
					Lus10015426 [exp]	5.3	0.8792
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	8.8	0.8876
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	9.4	0.8541
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	10.8	0.8526
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	16.1	0.8468

Compare expression of checked genes

Lus10042061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.