Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57440 80 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018069 [exp] 285 / 6e-95 AT5G13630 413 / 3e-132 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2) Lus10031072 [exp] 122 / 1e-33 AT3G57440 99 / 5e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050900 [exp] 103 / 7e-27 AT3G57440 76 / 9e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042062 pacid=23153876 polypeptide=Lus10042062 locus=Lus10042062.g ID=Lus10042062.BGIv1.0 annot-version=v1.0 ATGCCTGCAGATCAGTCTCCCTTCCCGTCAACTCTAGAACGAACCGCCGTTGCCTCACTACTCCTCCTCTCAACCACCATCCCCGACGCTCCTTCTCCAT CTGTTTCACCTCCTTCTTTCGCAGAACCTACTCTTGATGCTCAGTCGCTGAGCACAGGCACCGAATTGAAGAGAAAAATTCTCTGTGAAGAGAGCTCGAG CCTGCTTTCCACCGCTTCAGGATCTTGCATCTCATCGCCTGATGTGACTCCCGCTCAGAAGCTCAGGATAGTTTCCGTTGTTGCTCTCGACCATGACATG AAGCTCAAGGTGGTGAGGAAGAAGCGATCAAAAGTCTACTGGACCCCCATTGATCAAGAGAAGGAAGTCGTCCTAGGATGTGCAGCAAAGGTGCCAGCGA AATCACTCTCCACGGAGAACTCATGCCTCTCGAGTACTTCCAGTGCCAGTTCTAGCTCGAGGAGCTGGTACAACATCGGAGGTACTAAGAAAACAGAGGT CAGCTCCGCGGAGAAGTGGAGGAAGAAACAAGCAGGGTTCAGCTCTGGTTCAAAACACATGAATCACCAAGCTAACTCAATCCTGCAGCTGCTGTCTCGT GGTTGTTCCTCCGAAGTCAGGATGCGTCAAGTGCTTGGTGACAGCCCTGACACAAGCAAAGCCCTAAGAATGTTGCTAAGGCGAGAGGAGATTAAGAGAT CAGGTTCAGGAGGGCGTCAGGATCCTTATATTTACAAGGTTGCTGAGAAGACCAACTAG
AA sequence Show only first row Show all	>Lus10042062 pacid=23153876 polypeptide=Lus10042062 locus=Lus10042062.g ID=Lus10042062.BGIv1.0 annot-version=v1.0 MPADQSPFPSTLERTAVASLLLLSTTIPDAPSPSVSPPSFAEPTLDAQSLSTGTELKRKILCEESSSLLSTASGSCISSPDVTPAQKLRIVSVVALDHDM KLKVVRKKRSKVYWTPIDQEKEVVLGCAAKVPAKSLSTENSCLSSTSSASSSSRSWYNIGGTKKTEVSSAEKWRKKQAGFSSGSKHMNHQANSILQLLSR GCSSEVRMRQVLGDSPDTSKALRMLLRREEIKRSGSGGRQDPYIYKVAEKTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57440			unknown protein		Lus10042062 [exp]	0	1
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	5.0	0.9847
AT3G47570			Leucine-rich repeat protein ki...		Lus10030636 [exp]	5.7	0.9593
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	7.1	0.9846
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	7.5	0.9231
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	7.9	0.9178
					Lus10009618 [exp]	8.7	0.9846
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	10.0	0.9846
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10011983 [exp]	10.4	0.8687
					Lus10005830 [exp]	11.2	0.9846
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	12.2	0.9846

Compare expression of checked genes

Lus10042062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.