Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28730 702 / 0 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT3G51880 63 / 3e-11 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 60 / 1e-10 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT4G23800 58 / 1e-08 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT1G20696 52 / 9e-08 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT4G35570 50 / 2e-07 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT4G11080 51 / 2e-06 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT2G34450 46 / 9e-06 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT2G17560 44 / 4e-05 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT5G23420 42 / 0.001 HMGB6 high-mobility group box 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018073 [exp] 1073 / 0 AT3G28730 850 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10012252 [exp] 59 / 3e-10 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 59 / 5e-10 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 61 / 2e-09 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10040192 [exp] 55 / 2e-08 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 54 / 4e-08 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035511 [exp] 54 / 1e-07 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10001909 [exp] 55 / 2e-07 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 54 / 2e-07 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078500 [exp] 735 / 0 AT3G28730 836 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.004G124000 [exp] 725 / 0 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.002G009000 [exp] 61 / 9e-11 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 59 / 5e-10 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 58 / 7e-10 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 55 / 2e-08 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 51 / 3e-07 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.003G138000 [exp] 53 / 5e-07 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 53 / 7e-07 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.007G000900 [exp] 50 / 2e-06 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box CL0266 [flax] [poplar] PH PF03531 [flax] [poplar] SSrecog Structure-specific recognition protein (SSRP1)
Representative CDS sequence Show only first row Show all	>Lus10042065 pacid=23154010 polypeptide=Lus10042065 locus=Lus10042065.g ID=Lus10042065.BGIv1.0 annot-version=v1.0 ATGACGGAAAGTCACTCGTACAACAACATCTCAATCGGAGGCCGCGGCGGCACCAACCTCGGGCAGTGCAAGATTTATTCAGGTGGCATAATTTGGAAGA AACAGGGGGGTGGTAAAACAGTGGACGTTGACAAAACTGATGTTGCTGGATTGACGTGGATGAAAGTACCAAGAAGCAATCAACTGGGGGTTCAAATCAA AGATGGACTATACTACAAATTTACTGGCTTCCGCGACCAGGACGTGACTATCCTCAACAACTTTTTCCAAAGCTATTTTAGTATGACGCCAGAGGACAAG CAGCTTTCTGTCTCTGGGCGCAACTGGGGGGACATTAACTTAAGTGGTAATATGCTTACCTTTTTGGTGGGTTCAAAGCAAGCCTTCGAGGTATCCTTAG CAGATGTTGCACAGACTTCAATGCAAGGCAAAAATGATGTCGTTTTAGAGTTCCATGTGGATGACACAACAGGAGCTAATGAGAAAGATTCATTGATGGA ATTGAGTTTTCACGTACCTAATTCTAACACCCAATTTGTTGGTGACGAGAACCGTCCTGCTGCTCAGGTATTCCGTGAAAAAATTATGTCAATGGCAGAT GTTGGTGCTGGGGCTGAAGAAGCTGTTGTTACATTTGAGAGTGTTGGCATTCTCACACCAAGGGGTCGGTACAATGTTGAACTTCATCTATCCTTCCTAC GTCTCCAAGGGCAGGCCAATGATTTCAAGATTCAATACAGCAGCGTAGTTCGACTGTTTTTACTTCCAAAGTCTAACCAACCTCATACCTTTGTTATTGT GACTCTTGATCCTCCCATCCGAAAAGGACAAACTCTATATCCACATATCGTGTTGCAGTTTAACACAGATGAGGTGGGAGAACAAACCCTGACAATGAAC GATGATCTTTTGAATACAAAGTACAAGGACAAATTAGAAGCATCTTATAAGGGCCTTATTCACGAAGTGTTCACTACCATATTGCGTGGTTTGTCTAGCG CAAAAGTAACGAAGCCAGGAAAATTCCGTAGCTCTCAAGATGGTTATGCTGTGAAGTCATCTTTGAAAGCTGAAGATGGACTCCTGTATCCTCTTGAAAA GAGTTTCTTCTTCTTGCCTAAACCGCCAACCCTTATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCCGGTGGCTCAAACATGCAG TACTTTGATTTTCTAGTTAAACTGAAGACTGAGCAAGAACATCTATTTCGGAATATCCAGAGGAATGAATACCATAATCTCTTTGAATTTGTTCGTGGGA AGGGTTTGAAGGTTATGAACCTGGGAGGTAGTCAACCAACAGCCGGAGTGCCTATTATGGATAGTGTTGTAGACCATCATCCAGTTGACTCTTATTTGGT GCAAATTCAAAATGAAGCTGGTGGTGGAGAAGAAAGTGATGAGGAGGATGAAGACTTTGTTGCCGAGAAAGATGATTCAGGATCACCTACAGATGATTCC GGGGATGAATCAAATGGCAGTGACAGTGGAAATGAGAAAGAGGCAAGCCTTGCTATTAAGCCTTTGAAAAAGGAGGCCTCTTCTAAGGAAGCTTCATCTT CTAAGCCTGTGTCAAAGAAGAAAGCTAAAGATGGTGAGGGAGATGGTTCGAAGAAGAGGAAACTACCGAAGCAGAAGAAAGATCCCAATGCACCAAAGAA AGCTATGACTAGTTTCTTAATTTTCTCTCAGAATGAGAGAGAGAATATTAAGAAGAGTAATCCTGGAATTTCATTCGGGGATGTTGCAAAAGCGCTTGGT GACAAGTGGAAGACAATGTCAGCGGATGAAAAACAACCATTTAACGAGATGGCTAAAGCAGACTTGAAACGTTACCAAGATCAAGCGAGTGGATACAACA AAAACCCACCACAGCCAGACTCCACCGGCCAGACTCCGCCGTTGACGTCGACAGCGACTAATAAAATAATGTTGTCAGTTTCTAGTGTAGGATGTTTGAT CATTAGTGGGTATTTTGTTGGAAGATGA
AA sequence Show only first row Show all	>Lus10042065 pacid=23154010 polypeptide=Lus10042065 locus=Lus10042065.g ID=Lus10042065.BGIv1.0 annot-version=v1.0 MTESHSYNNISIGGRGGTNLGQCKIYSGGIIWKKQGGGKTVDVDKTDVAGLTWMKVPRSNQLGVQIKDGLYYKFTGFRDQDVTILNNFFQSYFSMTPEDK QLSVSGRNWGDINLSGNMLTFLVGSKQAFEVSLADVAQTSMQGKNDVVLEFHVDDTTGANEKDSLMELSFHVPNSNTQFVGDENRPAAQVFREKIMSMAD VGAGAEEAVVTFESVGILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIVTLDPPIRKGQTLYPHIVLQFNTDEVGEQTLTMN DDLLNTKYKDKLEASYKGLIHEVFTTILRGLSSAKVTKPGKFRSSQDGYAVKSSLKAEDGLLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMQ YFDFLVKLKTEQEHLFRNIQRNEYHNLFEFVRGKGLKVMNLGGSQPTAGVPIMDSVVDHHPVDSYLVQIQNEAGGGEESDEEDEDFVAEKDDSGSPTDDS GDESNGSDSGNEKEASLAIKPLKKEASSKEASSSKPVSKKKAKDGEGDGSKKRKLPKQKKDPNAPKKAMTSFLIFSQNERENIKKSNPGISFGDVAKALG DKWKTMSADEKQPFNEMAKADLKRYQDQASGYNKNPPQPDSTGQTPPLTSTATNKIMLSVSSVGCLIISGYFVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	0	1
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	1.0	0.9617
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	2.0	0.9600
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	2.8	0.9382
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	3.0	0.9531
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	4.2	0.9358
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	5.0	0.9463
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	5.5	0.9460
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	6.0	0.9490
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	6.6	0.9255
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	6.7	0.9109

Compare expression of checked genes

Lus10042065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.