Plant FIBer expression Database

Lus10042066 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57400 158 / 4e-46 unknown protein
AT5G52500 129 / 4e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018074
[exp]
386 / 3e-133 AT3G57400 290 / 1e-91 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G050100
[exp]
186 / 2e-56 AT3G57400 349 / 3e-115 unknown protein
Potri.016G056300
[exp]
170 / 2e-50 AT3G57400 343 / 5e-113 unknown protein
PFAM info
Representative CDS sequence
>Lus10042066 pacid=23153669 polypeptide=Lus10042066 locus=Lus10042066.g ID=Lus10042066.BGIv1.0 annot-version=v1.0
ATGGGCCTGCGACGTTGGGCTTGTTACCCGATGCTCCTGGGGCGGGTCAAGAGGAACTTCAAGCACGTCATGCTGGCGGACGTGAAATCCACGCTCATAG
TCGCCGGCGACCCGATCGGTCGGGTCAAGAACCTAGCACCCGAGTCCGTCGTGTATTTCACTTCGGCAGCAGCCAAACACAAAAAGGGCGGGAGAAGGGA
GAAATCAGGACATCGGACGGCGGCGGTGAATCCGGCGATTGTGACTGGCGGAGGGAGAGGAATCCGTCGATTATCGGCGGCGATGTTGACGGAGATCGTG
AGGGCGGCCATGCAACAGCACAAAAGGAAAGGCGGCGGGGTTGTTACCGAGTCGGGGATTTTGACCCACCTGCTTATCGGGAGCAGCAGCGAGCACATAC
TGAAGAACGTGAAGTTGACGGCGTCTCCGGAGTCGATACCGGATTGGGGCGTGGTTCGGGAGTCCGACTCTTCTAAGTACTCGATAATCCAGCGCGGTAA
TGATAAGAGTAGTAGTGACGATGTAGGCTCAGTAATTATGAAGAGAATATGTGCATGCGAGGATAATGTAGATTCTGTTTACAGGGATTGCTGCCACGGT
AGAGAATTATAA
AA sequence
>Lus10042066 pacid=23153669 polypeptide=Lus10042066 locus=Lus10042066.g ID=Lus10042066.BGIv1.0 annot-version=v1.0
MGLRRWACYPMLLGRVKRNFKHVMLADVKSTLIVAGDPIGRVKNLAPESVVYFTSAAAKHKKGGRREKSGHRTAAVNPAIVTGGGRGIRRLSAAMLTEIV
RAAMQQHKRKGGGVVTESGILTHLLIGSSSEHILKNVKLTASPESIPDWGVVRESDSSKYSIIQRGNDKSSSDDVGSVIMKRICACEDNVDSVYRDCCHG
REL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57400 unknown protein Lus10042066
[exp]
0 1
AT3G57400 unknown protein Lus10042067
[exp]
1.4 0.8560
AT3G06150 unknown protein Lus10034027
[exp]
2.0 0.8689
AT4G28230 unknown protein Lus10033724
[exp]
3.5 0.8539
AT3G05100 S-adenosyl-L-methionine-depend... Lus10033850
[exp]
4.6 0.8191
AT1G32860 Glycosyl hydrolase superfamily... Lus10001660
[exp]
6.9 0.8397
AT5G40150 Peroxidase superfamily protein... Lus10032170
[exp]
9.2 0.8208
AT5G04270 DHHC-type zinc finger family p... Lus10038701
[exp]
9.5 0.8050
AT2G22900 Galactosyl transferase GMA12/M... Lus10019265
[exp]
10.6 0.8157
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10026404
[exp]
11.6 0.8240
AT3G57400 unknown protein Lus10018074
[exp]
16.7 0.7864

Lus10042066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.