Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57400 102 / 3e-24 unknown protein AT5G52500 95 / 7e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018074 [exp] 483 / 1e-169 AT3G57400 290 / 1e-91 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056300 [exp] 171 / 3e-49 AT3G57400 343 / 5e-113 unknown protein Potri.006G050100 [exp] 170 / 1e-48 AT3G57400 349 / 3e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042067 pacid=23153561 polypeptide=Lus10042067 locus=Lus10042067.g ID=Lus10042067.BGIv1.0 annot-version=v1.0 ATGGGCTTCCTCCTTGTCTTCTTCCCCGACGACAACAAGGCCGCCGGAAAGGAACAAACTCCTCACCCCTCCCCTTCCGCCGCCTATTCTCCGGGAAACA CTACTTGCAATTACTCCAAACAAACAACACCAACAGCCATTATCAAACGAACAAATTCCAGCAATCCAATCCTCACCAAAGCTCAGTCCACCATCTCCAT CTGCTCCTTCTTGCTCCTCTTCTCCTTCCTCCTCTTCGCTCTCTCCACTTTCGAGCCCCCTGTTCGGCCTCCCCATCCCGCTACCATCCGCCTCACCTCC CGCCGCTTCCTCTCCGACGTCAACCCTCCTGCCAGAACGACTAACAGCCTGTACTACTGGCTCACCGACACCGCCGGCTCAATCGTCCGACGAACAGAGC TGGAGGAGGACGATGGTTCTGCTGCTGCGTCCTTTGCTCTGCAAGGTATGGGCCGGCTTTACCGGCGGGGAACCAGATCCATGGCCGACCTCCTGGTCGG ACACGTGGCGGAAGATACTAACGCTGAAGAATTCCGTCTGTTTCTCCGGATGCTTCACCGGTCCGGTGTCACCTCCAGAACCGACGTCGTATTCCTCTTC CCTTCGTCTTCAGATTCCAGATCCGGATTTGAAAGCGTGATTCTAGAGGAGAACGACTCCTTCTCCGCGCTGATTCAGCAGCATTTTACCACCGTGAATC GCTCCCCATCGGCGTTGCTTACGGAGAACGCGACGGTAGCGGAACGTTCGTCCTTGATGAGATTCGACGCCACGCGCTTCGTCAGAAGAAGATCGACTAA CAAGGAAACTCAGATGGTGGAGCCCACTTTGTGGGGTAAGAAAATTCGACTCAACACTACCAGCACTGTCATTAATGCCACTGACGACGGTGATGGCGTG CCACTGACGACGGTGATGGCGGCGAGTCAACCCGGCTGA
AA sequence Show only first row Show all	>Lus10042067 pacid=23153561 polypeptide=Lus10042067 locus=Lus10042067.g ID=Lus10042067.BGIv1.0 annot-version=v1.0 MGFLLVFFPDDNKAAGKEQTPHPSPSAAYSPGNTTCNYSKQTTPTAIIKRTNSSNPILTKAQSTISICSFLLLFSFLLFALSTFEPPVRPPHPATIRLTS RRFLSDVNPPARTTNSLYYWLTDTAGSIVRRTELEEDDGSAAASFALQGMGRLYRRGTRSMADLLVGHVAEDTNAEEFRLFLRMLHRSGVTSRTDVVFLF PSSSDSRSGFESVILEENDSFSALIQQHFTTVNRSPSALLTENATVAERSSLMRFDATRFVRRRSTNKETQMVEPTLWGKKIRLNTTSTVINATDDGDGV PLTTVMAASQPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57400			unknown protein		Lus10042067 [exp]	0	1
AT3G57400			unknown protein		Lus10042066 [exp]	1.4	0.8560
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	3.0	0.8224
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	4.2	0.8159
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	6.3	0.8204
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	8.4	0.8323
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	9.4	0.8098
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	9.8	0.7861
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	10.0	0.8212
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	12.4	0.8147
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	13.0	0.8001

Compare expression of checked genes

Lus10042067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.