Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41720 1033 / 0 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 241 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 218 / 2e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 219 / 7e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 218 / 6e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 208 / 8e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 205 / 1e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 205 / 2e-56 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 207 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 205 / 2e-55 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018075 [exp] 1505 / 0 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033127 [exp] 237 / 3e-66 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10002107 [exp] 228 / 2e-63 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 226 / 3e-62 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 211 / 3e-58 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10003424 [exp] 211 / 6e-57 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10020002 [exp] 209 / 1e-56 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022290 [exp] 206 / 4e-56 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10014245 [exp] 202 / 1e-55 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049900 [exp] 1169 / 0 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 240 / 2e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 232 / 1e-64 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.009G092100 [exp] 230 / 4e-64 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 227 / 2e-62 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 219 / 4e-61 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 216 / 3e-59 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 211 / 9e-59 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G166200 [exp] 213 / 5e-58 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 214 / 6e-58 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042068 pacid=23153705 polypeptide=Lus10042068 locus=Lus10042068.g ID=Lus10042068.BGIv1.0 annot-version=v1.0 ATGGCGGTCATGCTAAACCACCATCTCCACGGCTGCCACCACTTCACCTCCTCCTTCGTCTGCAATACGTCCAAAACCCACGCAGCATTCGAAGAGAAGA AGATTGGCTTCGTTGATTATGACAAGGGCGAGCACCTCATTTCCACTGAGCTCAGCGGAGTTAGGCAAGACAAAATTCCTAGACGTTACCGACTGAGAGT CGATCGAGATAGGTTCCAGAAGGACTGGTCACTCTCTCAGGTCGTCGGTAAGGTTCTCGAGCTCGACCCTCGCCGTGACGATGTTGAGCGGGTCTTGAAC CATTGGGTCGGCCGCTTCGCTCGCAGGAATTTCCCTTATCTCATCAAGGAGATAACGGAGAAGGGATCGCTTGAGCACAGTCTGTTGGTTTTCAGTTGGA TGAAAAACCTGCAGAATTACCGTGCTTCCACTGACATCTATAATAGGATGATCAAGCTGCTGGCTAGGCATAACCGGATTGACCAGGCTCGGGGTTTTTT CTTTGAAATGCAGAAATGGAGGTGCAAACCTGATGTTGAGACTTACAATGCACTTATCAACGCTCACGGCAGAGCAGGGCAATCGCGGTGGGCAATGAAT ATAATGGAAGACATGCTTCGTGAAGCTATAACACCTAGTCGATCCACATATAATAATTTGATTAATTCTTGTGGATCCAGTGGTAATTGGAGAGAGGCGC TGAAGATCTGCAAGAAAATGACTGAAAATGGTGTTGGCCCTGATTTAGTGACTCACAACATTGTTTTATCTGCTTACAAGACTGGGGCTCAGTATTCGAA AGCCTTGTCTTACTTTGAGCTGATGAAAGGAACAAACATTAGACCAGATACAACAACACTCAACATTGTGATGCATTGCTTAGTGAAGCGTGGTCAATAT CAGAAAGCGCTGGATATTTTCAATTCCATGAGGGATAAGAGAGCAGATTGCCTTCCTGATGTCGTCACCTTTACAACTGTCATCCATTTGTATTCTTCAA TTGGGAAGATTGAAAATTGTTTGGCTGTGTTCAACACCATGCTCTCCGAGGGGATGAGGCCTAATATTGTCTCATATAATGCCTTGATAGGAGCATATGC TTCTCGCGGGATGAGTGATGAAGCACTTTCAATTTTTCAGGAAATTAGGAAAAACGGGTTTAGTCCTGATGTTGTGTCCTACACTTCTTTGCTGAGTTCC TATGGAAGATCACATCAACCAGTGAAAGCCAGGGAGGTGTTTGAGATGATGAAGGGAGAAAAACTGAAACCAAATATTATCAGCTATAATGCATTGATTG ATGCATATGGATCTAATGGACTCTTAGCGGAAGCGGTAGCCATCTTACGGGAAATGGAGATTGCTGGTATTAAGCCAAATGTAGTGTCTGTAAGCACTCT TTTAGCTTCTTGTGCTCGTTGTGGCCGAAAAGTTAATATCGATGCAGTGCTATCGGCAGCTGACATGCGGGGGATTAGATTGAACACCGTGGCTTATAAT TCAGCTATTGGAGCGTATATGAACGTTGGGGAATATGAGAAGGCTATTGCATTGTATCGATCAATGGGTAAAAGGAAAGTATTTCATGATTCTGTCACTT ACACCGTCTTGATAAGTGGCTGCTGCAAGATGTCTAAATACAGTGACGCGACAGAGTTTTTTAGCAAAATGGTAGATTCAAAAATGACCTTGACCAAGGA GGGCCTGGTTGCAGAAGCAGAATCTGTATTCAACATGATGAAGACATCTGGTTCTCATCCTGATGTTATTGCCTACACTATGATGCTACACACGTACAAT TTAGCAGAATGCTGGGAAAAAGCTTGTGGTTTACTTCAAGAAATGGAAGCCAATGGAATTCAACCAGATACTGTTGCATGTTCGTCTCTAATGAGAGCTT TCAATAAAGGAGGTAACCCAGGCCAGGTTCTTGCTTTGGCTCAGCGGATGAATGATAAAGGAATCCCATTCAACGATTCAATTTTCTTCGAAATGATATC TGCTTGTAGCTTGTTACGAGAATGGAAGAAAGCAATTGACCTGGCTCGACTGATTGAGCCTTCATTCCCTGTGGTTTCCGTTGGGGTTTTGAATCAGCTT CTTCATCTTCTCGGAAAAAGTGGGAAGGTCGATTCTATGATAAAGCTATTTTACAAGATTATAGAATCGGGCGCTGAGATAAATGTCAACAGTTACTCAG TATTGTTGAAGAATCTTTTAGCCATTGGAAACTGGAGGAAATACATAGAGGTTTTGGAGTGGATGGAGAGTTCAAGAGTCGAGCCATCTTATGGAATGTA CGAAGACATATACAACTTTGCACATAAACACGGGGGAGAGTATGCCGATACCATCAAAGAAAGAGTCGAGGAGCCTCCTTTGGTTTTTTGGATTAACAGA TTCACTGAGAAGGCAGCGGCTAGCCACTAG
AA sequence Show only first row Show all	>Lus10042068 pacid=23153705 polypeptide=Lus10042068 locus=Lus10042068.g ID=Lus10042068.BGIv1.0 annot-version=v1.0 MAVMLNHHLHGCHHFTSSFVCNTSKTHAAFEEKKIGFVDYDKGEHLISTELSGVRQDKIPRRYRLRVDRDRFQKDWSLSQVVGKVLELDPRRDDVERVLN HWVGRFARRNFPYLIKEITEKGSLEHSLLVFSWMKNLQNYRASTDIYNRMIKLLARHNRIDQARGFFFEMQKWRCKPDVETYNALINAHGRAGQSRWAMN IMEDMLREAITPSRSTYNNLINSCGSSGNWREALKICKKMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTLNIVMHCLVKRGQY QKALDIFNSMRDKRADCLPDVVTFTTVIHLYSSIGKIENCLAVFNTMLSEGMRPNIVSYNALIGAYASRGMSDEALSIFQEIRKNGFSPDVVSYTSLLSS YGRSHQPVKAREVFEMMKGEKLKPNIISYNALIDAYGSNGLLAEAVAILREMEIAGIKPNVVSVSTLLASCARCGRKVNIDAVLSAADMRGIRLNTVAYN SAIGAYMNVGEYEKAIALYRSMGKRKVFHDSVTYTVLISGCCKMSKYSDATEFFSKMVDSKMTLTKEGLVAEAESVFNMMKTSGSHPDVIAYTMMLHTYN LAECWEKACGLLQEMEANGIQPDTVACSSLMRAFNKGGNPGQVLALAQRMNDKGIPFNDSIFFEMISACSLLREWKKAIDLARLIEPSFPVVSVGVLNQL LHLLGKSGKVDSMIKLFYKIIESGAEINVNSYSVLLKNLLAIGNWRKYIEVLEWMESSRVEPSYGMYEDIYNFAHKHGGEYADTIKERVEEPPLVFWINR FTEKAAASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	0	1
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	1.0	0.8671
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	2.0	0.8034
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	2.0	0.8592
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	5.9	0.8019
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	12.4	0.7822
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	13.6	0.8005
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10016172 [exp]	15.6	0.7249
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	16.3	0.7469
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	20.0	0.7802
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	20.2	0.7520

Compare expression of checked genes

Lus10042068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.