Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16390 825 / 0 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 726 / 0 CHR34 chromatin remodeling 34 (.1) AT1G05490 298 / 1e-83 CHR31 chromatin remodeling 31 (.1) AT5G20420 293 / 3e-82 CHR42 chromatin remodeling 42 (.1) AT3G42670 288 / 9e-81 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT3G24340 276 / 7e-77 CHR40 chromatin remodeling 40 (.1) AT3G32330 217 / 9e-63 DNA repair protein-related (.1) AT3G32280 165 / 2e-43 ATP-dependent helicase family protein (.1) AT3G31900 139 / 3e-35 ATP-dependent helicase family protein (.1) AT5G63950 127 / 1e-29 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041963 [exp] 914 / 0 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 910 / 0 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10003003 [exp] 293 / 9e-83 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10040956 [exp] 293 / 3e-82 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10011033 [exp] 289 / 2e-80 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10009840 [exp] 287 / 3e-80 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040136 [exp] 191 / 2e-49 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10032785 [exp] 164 / 8e-41 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10037696 [exp] 120 / 3e-27 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120700 [exp] 900 / 0 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 785 / 0 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.008G073500 [exp] 300 / 2e-84 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.014G050200 [exp] 293 / 1e-82 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.004G159100 [exp] 208 / 1e-61 AT2G16390 210 / 1e-63 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 186 / 6e-51 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.007G102800 [exp] 126 / 3e-29 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 123 / 3e-28 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.001G123400 [exp] 119 / 8e-27 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.013G048500 [exp] 115 / 1e-25 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042070 pacid=23153638 polypeptide=Lus10042070 locus=Lus10042070.g ID=Lus10042070.BGIv1.0 annot-version=v1.0 ATGGAAGCTCGACCGAAGACCTCGCCTGGAAGTCAATCGGCGCCCACCGCTGCTTCACCTTCGGCTTTCTATTATGACTCTGATTATGCTCGTATTGAAG AAGAAAAAGACTTGGAGGAGTTTATCAACCAAAAAAAAGAAGCCTTGGAGGCCGGTGATTTTGGAAGTGTTTCCGAGGATATTAGGAAACTTTTGAATCG GGTGTCCAGAAAACGTCCAATTGTAACAGATCATGCTGCTTCCACTAACGTTCCTGAGGCGAAAAGGGTTCGACGCTCAAATTGTCATGATGTCTGCTGC AACAAGTCTGTGGCAGCTAAACCAGCAGGCGATGTTGAAATTATTACCATAGATTCCGACGATGAAGAAAATGGAGAAGACACGGCGATCAGTTCTTTTC AGGATGTTGTCCCGAAGACCCCAAATGTTGTTCGTGGTTACTCTAAAGCAGCCCAAGCACAAATTGTGGCAAAGTTCAATCTTGATGGAGAAGACAGTGG GGAAGACATGTCCATTTCTCCCTTGCGGGACGTTTTCCCGACAAGTCCATATGGACAAAATCCTGCAGAGGAGTGTTCCGTTAATCTTGGTGGTTATCAG GCCATTGACAGTGATTGGAAGTCGGGAAGCATTGCTGACGATATTGGCTGCGATAGAAATGAAACCTTTGACAGTATTGGTGGAACTTCAACGTCAAAAC ACCTGACCAATGATATAGGTGGGAACAAAGTCGCTCGTAGTCATATTGAGATTGTCGAAAAGGTGGAGACTTTGGTGCCACATCATGATATTTGTGGTTA CTCTGTTACAAGCAACGCAGCAGCTCAAGTACAAACTGTCGTTGTCTTGGATTCGGATCGAGAAGACAGTGACATGTCAATTTCTCCCTTGCGTGATGAT GTTGCTGTGGCAGATCTATACAGACCCCTTTCTGCTGACACACAGGCTGTAGGGTCGATTGAAATTGTGAGCAATGATGATCCCATGCCAAAGAAGAATG GATCAGAACATCTTGCTAATGATACGGTTGATATTGTGAACAATGATGATCCCATGCCAAAGAAGAAAGGATCAGGACATCTTTCTAATGATACGGTTGA AATTGCGAACAATGATGATTCCATGACAAAGAAGAAAGGATCAGAACATCTTTCTAATGATACGGTTGAAATTGTGAACAATGATGATCCCATGCCAAAG AAGAATGGATCAGAACATCTTTATAATGATACGGACCATAAGGAAAATTTAACTCTTGATACTAGCATGACTAGTGAAGATCCGATGCTTTGGAAGAGTG GCTACAATCCTAAAGAAACTGAGTCTGACGAAGATGGGCTGGGAGACATTTGGAAGGAAATGTCTATGGCATTGGAACACACAGAGAACGCCGAGGATCT TTCATCTAATCCACAAGACTATGAAGCATGGTGTGAACACGATATAATCCACAAAGAAGATATCGGTGATGTATGTCGAATATGCGGGGTTATAACTAGA GATATCACCTCGATAGTCGATATCCAATTTATCAAGCAATCCATTTTCAGCAAGTCCTATGAGAAACTTAATCTCTCAATGCGCCTTCCTTTGAATCAGG CCAAAAGAAGCGGGCGCACCTATCTTCCGAGCTCCAGGAATTCCAAGAACGAGAGTTCCAATGAGGCTGTTGATGTTCGCCAAGCAGACATTACCACCAC CGAGATTTGTCCTCATCCGAGACACAGAAAACTAATGAAAGCTCATCAAGTGGAAGGTTTCAATTTCCTCTGCAGCAATCTGGTCTCCGATGACCCCGGA GGATGCATCTTAGCTCATGCACCCGGATCAGGCAAAACCTTCATGATCATCAGTTTCATGCAAAGCTTCCTTGCGAAGTATCCGAATGCTCGACCACTAG TGGTTCTTCCCAAGACAATCCTGCACACTTGGCGGAAAGAGTTCGAAACATGGAGGGTCGAAGACTTCCCTATTTACGATTTCTACGCAGCGAAAGCAGA AAACCGAGCTCAGCAGTTAGATGTCCTGAAAAAATGGGTTGACAAGAAGAGTGTGCTTTTGTTAGGATACCAACAACTATCCTCCATCATATGTGATCAT GGGGGAAGTCCGGAGACTGTTAACTGTCAAAAGATACTCCTTCAGCAACCGTCACTTCTCGTTCTGGACGAAGGGCACACTCCGAGGAATGAGAATACGG ACGTTCTGCAATCTCTGGCGAAAATTCAGACGCCTCGGAAGATTGTACTCTCGGGAACCCTTTATCAGAATCATGTGGAGGAGGTCTTTAACGTTCTGAA CCTCGTACGTCCTAAATTTCTCAAGTTGGACACGAGTAAACCGATTGTCAGACGGATTTTGAGCAAAGCACACATACCGAGGGGGATGAAGCAAGTTAGA GTTGGCGACGAAGGCACTTTCTGCAAGGTAGTTGAGTACACATTGCAGCAAGACACGGATTTCAAGAGCAAAACGTCTCTCATACATGATCTCCGCGAAA TGACCAATAGTGTCTTACATTACTACAAAGGAGACTTCTTGGACGAGCTCCCGGGACTTGTCGATTTGACTGTGGTACTCAACCTCAGTAATATTCAGCG GAAAGAGGTCGAAAATCTCAAGAAACTGCCAGGGAATTTTAAGAAAATGGCAGTTGGTAGTGCTGTGTATCTTCATCCTAAACTGAAATCACTCTCCGAT AATTTGGAAGCTACTGGGAAGGTAATGGACGAACTGGTGGAGAAGATCGACATACGAGATGGAGTTAAAGCAAAGTTCTTGCTGAACTTGTTAAGCTTAT GTGAGAAAACCAATGAGAAAGTGTTGATATTTAGTCAGTACCTCACACCTCTAAAGTTTCTTGAGAGGTTGCTGACGAAAGAGAAGAAATGGAGTCTAGG AAGAGAAATGTTCATGGTCACAGGGAAAAGCGAGAAGAGGGAAAAATCTGTGGAGGATTTTAACAACTCGGAAGATGCTAAGGTTTTCTTCGGGTCGATT AAGGCCTGTGGGGAAGGAATCTCCCTGGTAGGAGGATCCAGGGTGATTGTACTGGATGTGCATCTGAATCCTTCGATAACTCGTCAGGCTATAGGGAGAG CATTTCGGCCAGGGCAGAAGAAGGTGGTGTATGTGTACAGACTGATTGCTGCTGAATCCCCAGAGGAAGAAGATTATCATACCTGTTTCAGGAAGGAAGT GATTGCAAAGATGTGGTTCGAGTGGAACGAGTTCTGTGGGTTTCGGGATTTTAAAGTCGAACCGGTCGAGGTGCAGGAGTGTGGCGATCGATTCATGGAG GATCCTCGAATCGCTGGAGATGTGCGGACTCTGTACAGAAGGTATGCATCTTAA
AA sequence Show only first row Show all	>Lus10042070 pacid=23153638 polypeptide=Lus10042070 locus=Lus10042070.g ID=Lus10042070.BGIv1.0 annot-version=v1.0 MEARPKTSPGSQSAPTAASPSAFYYDSDYARIEEEKDLEEFINQKKEALEAGDFGSVSEDIRKLLNRVSRKRPIVTDHAASTNVPEAKRVRRSNCHDVCC NKSVAAKPAGDVEIITIDSDDEENGEDTAISSFQDVVPKTPNVVRGYSKAAQAQIVAKFNLDGEDSGEDMSISPLRDVFPTSPYGQNPAEECSVNLGGYQ AIDSDWKSGSIADDIGCDRNETFDSIGGTSTSKHLTNDIGGNKVARSHIEIVEKVETLVPHHDICGYSVTSNAAAQVQTVVVLDSDREDSDMSISPLRDD VAVADLYRPLSADTQAVGSIEIVSNDDPMPKKNGSEHLANDTVDIVNNDDPMPKKKGSGHLSNDTVEIANNDDSMTKKKGSEHLSNDTVEIVNNDDPMPK KNGSEHLYNDTDHKENLTLDTSMTSEDPMLWKSGYNPKETESDEDGLGDIWKEMSMALEHTENAEDLSSNPQDYEAWCEHDIIHKEDIGDVCRICGVITR DITSIVDIQFIKQSIFSKSYEKLNLSMRLPLNQAKRSGRTYLPSSRNSKNESSNEAVDVRQADITTTEICPHPRHRKLMKAHQVEGFNFLCSNLVSDDPG GCILAHAPGSGKTFMIISFMQSFLAKYPNARPLVVLPKTILHTWRKEFETWRVEDFPIYDFYAAKAENRAQQLDVLKKWVDKKSVLLLGYQQLSSIICDH GGSPETVNCQKILLQQPSLLVLDEGHTPRNENTDVLQSLAKIQTPRKIVLSGTLYQNHVEEVFNVLNLVRPKFLKLDTSKPIVRRILSKAHIPRGMKQVR VGDEGTFCKVVEYTLQQDTDFKSKTSLIHDLREMTNSVLHYYKGDFLDELPGLVDLTVVLNLSNIQRKEVENLKKLPGNFKKMAVGSAVYLHPKLKSLSD NLEATGKVMDELVEKIDIRDGVKAKFLLNLLSLCEKTNEKVLIFSQYLTPLKFLERLLTKEKKWSLGREMFMVTGKSEKREKSVEDFNNSEDAKVFFGSI KACGEGISLVGGSRVIVLDVHLNPSITRQAIGRAFRPGQKKVVYVYRLIAAESPEEEDYHTCFRKEVIAKMWFEWNEFCGFRDFKVEPVEVQECGDRFME DPRIAGDVRTLYRRYAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	0	1
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Lus10002619 [exp]	1.7	0.8157
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	4.9	0.7988
AT2G46980			unknown protein		Lus10009259 [exp]	5.5	0.8217
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	5.7	0.8023
AT2G33793			unknown protein		Lus10018490 [exp]	6.2	0.7478
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	7.1	0.8020
					Lus10033157 [exp]	7.5	0.7889
AT2G39870			unknown protein		Lus10004675 [exp]	8.4	0.8394
AT2G22370			unknown protein		Lus10023150 [exp]	13.9	0.7934
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10006766 [exp]	16.1	0.8011

Compare expression of checked genes

Lus10042070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.