Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39010 691 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 590 / 0 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G70710 581 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G02290 560 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G23210 559 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G02800 549 / 0 ATCEL2 cellulase 2 (.1) AT1G22880 517 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G71380 512 / 3e-179 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G09740 428 / 3e-146 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 425 / 3e-145 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018077 [exp] 941 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10031090 [exp] 612 / 0 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 570 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 548 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 537 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027205 [exp] 517 / 0 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 516 / 1e-180 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10034199 [exp] 509 / 3e-178 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027201 [exp] 500 / 9e-174 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123900 [exp] 731 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.004G162200 [exp] 731 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 575 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 572 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.002G202400 [exp] 548 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 543 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 535 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 530 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.015G127900 [exp] 525 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 520 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10042071 pacid=23153792 polypeptide=Lus10042071 locus=Lus10042071.g ID=Lus10042071.BGIv1.0 annot-version=v1.0 ATGAAGACTACTCTTTCCCTCCTCTTCCTTCTCCTCCTCGCCAATTCCTTCCCGTCATCTCTCTCCGCCGCAACAAACTCTGGTCGCCGTCGCCATGACT ACTCCGACGCCCTGTCCAAGTCCATCCTCTTCTTCCAAGGCCAGCGTTCCGGCTCCCTCCCCAGGGACCAGCGTCTCGGTTGGCGTGCGGACTCTGGCCT CTCCGACGGCCGGGGAACATACGGTGTCGATCTCACCGGCGGGTACTACGACGCTGGTGACAATGTCAAGTTTGGATTCCCCATGGCCTTCACCACCACT ATGCTCTCCTGGAGCATCATTGAGTTCGGGGACGACATGCCTCCCGCCGAGCTTCGCAATTCCCTCGTCGCCGTCCGCTGGGCCTCCGACTACCTCCTCA AGTCCGTCTCCCAGCTTCCCATCCGTATCTTCGTACAGGTAGGGGATCCAATTTCGGATCACGACTGCTGGGAGAGACCCGAAGACATGGACACCTTAAG AACAGTGTACGCGGTGGATGCTCCAAACCCAGCATCAGACGTGGCAGGGGAGACCGCCGCAGCTCTGGCTGCTGCCTCCATTGCATTCCGGCAGTCAGAT CCCGGTTACTCCCAAACGTTGCTGAGAAACGCCGTCAAAACTTTCCAGTATGCGGATACCCACAGAGGAGCTTACAGCGACAACTCTAACATTAGAGAAG GTGTCTGCCCCTTTTACTGCGACTTTGATGGATACCAAGACGAGTTGTTGTGGGGAGCAGCTTGGTTAAGGAAGGCAACAGGGGACGACACATATCTCAC TTATCTCGAAGACAACACCAGAACACTCGGCGCCGATGACAACATCAACGAGTTCGGTTGGGACAACAAGCACGCCGGCATCAACGTTCTCGTCGCCAAA GAGGTCGTACAAGGAAAAAACGACGTCGCATCACTCCGATCCTACAAATCATCAGCAGACAGCTTCATCTGCACGCTAATCCCAGACTCCCCTGCATCAT CACACGTTCAGTACACTCGAGGAGGACTTATTTACAAACCAGGTGGCAGCAATCTCCAGCACGCCACTACCATCTCTTTCCTCCTCCTATCCCACGCGAA TTACTTGGACCGTACTCACCAACCGCTCAACTGCGGAAACGACGTCGTTTCAGCTGACGGACTTCGTTCGCAGGCGAAGAGGCAAGTGGACTACATCTTG GGCGACAACCCTCTGGGAATGTCGTACATGGTCGGATACGGGGATACTTACCCGCGACGGATTCATCACCGGGGATCTTCTCTACCGTCAGTGAAGGTTC ATCCGGAGGCGATTGGTTGCGGTCAGGGCTCGGTTTATTATAAATCGGCTGGTCCCAACCCGAATGAGCTGACCGGTGCTGTGGTGGGTGGACCGGGAGA GGACGATGAGTTTTCGGATGATCGGGCTGATTTCAGGAAGTCTGAGCCGGCGACTTATATTAATGCGCCGTTTGTCGGCGTGCTTGCTTACTTTGCTGCT AATCCTGATTTTTAA
AA sequence Show only first row Show all	>Lus10042071 pacid=23153792 polypeptide=Lus10042071 locus=Lus10042071.g ID=Lus10042071.BGIv1.0 annot-version=v1.0 MKTTLSLLFLLLLANSFPSSLSAATNSGRRRHDYSDALSKSILFFQGQRSGSLPRDQRLGWRADSGLSDGRGTYGVDLTGGYYDAGDNVKFGFPMAFTTT MLSWSIIEFGDDMPPAELRNSLVAVRWASDYLLKSVSQLPIRIFVQVGDPISDHDCWERPEDMDTLRTVYAVDAPNPASDVAGETAAALAAASIAFRQSD PGYSQTLLRNAVKTFQYADTHRGAYSDNSNIREGVCPFYCDFDGYQDELLWGAAWLRKATGDDTYLTYLEDNTRTLGADDNINEFGWDNKHAGINVLVAK EVVQGKNDVASLRSYKSSADSFICTLIPDSPASSHVQYTRGGLIYKPGGSNLQHATTISFLLLSHANYLDRTHQPLNCGNDVVSADGLRSQAKRQVDYIL GDNPLGMSYMVGYGDTYPRRIHHRGSSLPSVKVHPEAIGCGQGSVYYKSAGPNPNELTGAVVGGPGEDDEFSDDRADFRKSEPATYINAPFVGVLAYFAA NPDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10042071 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Lus10028920 [exp]	7.9	0.4793
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010799 [exp]	10.0	0.5944
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	13.6	0.5891
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	13.7	0.6330
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10005476 [exp]	15.3	0.5832
					Lus10034034 [exp]	16.3	0.5525
AT5G03050			unknown protein		Lus10030557 [exp]	18.7	0.5732
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	19.9	0.5608
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	21.0	0.5608
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	22.0	0.5608

Compare expression of checked genes

Lus10042071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.