Lus10042072 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16485 896 / 0 nucleic acid binding;zinc ion binding;DNA binding (.1)
AT3G51120 522 / 1e-158 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1)
AT2G18090 297 / 1e-84 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (.1)
AT5G63700 202 / 2e-54 zinc ion binding;DNA binding (.1)
AT5G08430 150 / 2e-37 SWIB/MDM2 domain;Plus-3;GYF (.1)
AT5G23480 96 / 8e-20 SWIB/MDM2 domain;Plus-3;GYF (.1)
AT2G35605 51 / 3e-07 SWIB/MDM2 domain superfamily protein (.1)
AT4G34290 51 / 5e-07 SWIB/MDM2 domain superfamily protein (.1)
AT2G14880 50 / 8e-07 SWIB/MDM2 domain superfamily protein (.1)
AT5G36670 52 / 3e-06 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018078 1925 / 0 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Lus10014271 546 / 2e-164 AT3G51120 644 / 0.0 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1)
Lus10025973 361 / 9e-102 AT3G51120 487 / 2e-148 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1)
Lus10014272 330 / 1e-92 AT3G51120 391 / 7e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1)
Lus10025974 320 / 8e-89 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1)
Lus10020897 99 / 7e-21 AT5G08430 228 / 4e-68 SWIB/MDM2 domain;Plus-3;GYF (.1)
Lus10012522 54 / 2e-06 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1)
Lus10027738 53 / 3e-06 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Lus10035553 52 / 5e-06 AT2G36720 809 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G161700 1124 / 0 AT2G16485 1050 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Potri.009G123800 1096 / 0 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Potri.007G016000 684 / 0 AT2G16485 709 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Potri.005G117300 675 / 0 AT2G16485 695 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Potri.011G078050 235 / 3e-63 AT5G63700 368 / 3e-116 zinc ion binding;DNA binding (.1)
Potri.001G305900 222 / 1e-61 AT5G63700 406 / 2e-135 zinc ion binding;DNA binding (.1)
Potri.004G133600 117 / 1e-26 AT5G08430 405 / 3e-135 SWIB/MDM2 domain;Plus-3;GYF (.1)
Potri.001G392801 52 / 4e-06 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Potri.016G097300 52 / 4e-06 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Potri.005G134500 51 / 5e-06 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
PF02201 SWIB SWIB/MDM2 domain
CL0673 GYF PF02213 GYF GYF domain
Representative CDS sequence
>Lus10042072 pacid=23153874 polypeptide=Lus10042072 locus=Lus10042072.g ID=Lus10042072.BGIv1.0 annot-version=v1.0
ATGGATCCCGAAGAGGACCCCGATTCAATTCCCTCCTCAGAACCCTCCCCACCTTCTCAAGCGGATACCATTTCACCGCTCCCAACGGCCACGCCGATTG
AGCAGTCTCCGTCAGCTGAGCCAGTGAGTACATCCGTGGACAACGCTCAAGGGACGCCGTACGAGTTGCGTGGCAGTGAGCTGCAACCGCCGGTGAGTAA
TCACGAGTCGGAAGCGGCGGAGGTTGTCGATGAATTCGAGGAGCGAGTGAAGGATTCTGAGCGGAGCCATGAAGAGCTGGCTGGCGGGTCCGGCGGTGAG
GAGGAGTCTCAGTCAGTTGCTGACGAGGCAGCGGCGAGTGAAATGGAAATGACCGTTGATGAGCTTGGAGATCATGCTGAAGGATCAGAGGACGTGTCTT
TGGTCGTTGAAGAGAGCAAGGAGGTTGCTGTGAGAGGAGAAGACTCCTCTGCTGGAGTTGTTGTCGGAGAGCAGGAGAGCAGCGGTATTGTTGACAATGT
CGGTTCACTAGGTAAGGCTGATGTGGACGTCTCTGGTAAGGAGGAAACTCCTGGCGAGACACTGGTAAGCCAGGAGGTGGATGAATTCTCGATGGTTGAA
AAAGTTGAGCAGACAGAGAAGAAAGACGAGGCAGAGGAGGAGAAACAGAATGCGTTGGTGGTTGAGGAAACCACGAAGAAGGACGAGGTAGATAATGTGG
AAAACAAAGATGAGGTAGACGAGAAGCAGATTGAATTGGTTGAGGGGGTCTCCATGAAAGACAAGGAAGACGGTGTCGAGAAGAAGGATGAAATGGAGGT
TGGTCCCGTGCCAGAAAAAGATATGAATGGAGAGAACGTTGATGGAAGTGGGAATGTGGAGGATGATGGCGGAGAGAAGGTGGATAGGGCATGTGTAGAT
GATGTAACAGAGGAAATCCAAGGTTCTGAACAGAATGAAACAGCTAATGTTGGTAGGAGTATTGAGGAAGTAGACGAGATGGAGGTGGATGATGGTATTG
AGGAGAAAGATAAGGGAGATGAGAGACTCGACATAAAAGAAGAGGAAGGTGTGAAGGTGAGTGAAGCTGTAGAAGAGACGGAGAATGTTGATGTGGCAAT
GGATAGGGATGACGAGTCGAATGAATCGGAAGTAGAGTATCTGAAGTTGAAAGAAGTGGCAGAAGAGGATCACAAATTGACTGGAGCGAAAGAAGAGGCT
TTTGAGATGAATGAAGTGGAAAAAGATGCTGAGAAAGTCAATGAGGCAGTAGATGGGGATGAAAAGTTGAATGAATCAGCAGGAGAGGGTGTGAAGTTGA
ACGAAGTAGCTGAAGAGGATCAGAAGTTGACTGGAGCAAACGAAGAGGTTGTGGCCATGAAAGAAGTTGAAAAAGAGGAAGAGAATGCTGATGTGACAAT
AGATGGGGATGCCAAGTTGACTGAAGTGGAAGAAGAGGATCTAAAATTGAACGAAGTAGCAAAAGAGGATGCAGAGGCGAGTGAAGCAAATGAAGAGGTC
GTGAAGGTAGAAGGAGCTGAAGAACAGAATATCAATGAGTTGGATGAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGAATGAAGCTGAAGAAG
AAGACAAAGAAGATACTGATGAAGAAATGACTGAAGTGGCCGAAGAGGATGATAAGATGAATGAGGAAGAAGGAGGAGAAGAAGTAGAAGAAGGTGATGA
TGAGAAAATGAATGAAGCAGAGGATACAGAAGTGGCAGCAGAAGACAATGTTGAGGAAGTGAGTCAAACTAGCAGTGGTAAGAGGAAGCGGGGAAAGAAT
GCAAACGTAATTGGTAAATCGCCATCAAAGAAGAAGACGGAGGAGGATGTATGTTTTATTTGTCTTGACGGCGGGGAGCTTGTCCTGTGTGATCGCAGGG
GGTGCCCAAAGGCATACCATCCCTCCTGCGTAAACCACGATGATGCTTTTTTTCAAACGAAAGGAAAATGGTATTGCGGTTGGCATATTTGCAGTAAGTG
TGAGAAGAATGCTAACTACATGTGTTTGACATGTACATTCTCTTTGTGCAAAGGGTGTATCAAAGAGGATGCTATATTTTGTGTTAGAGGTAACAAAGGG
TTCTGTGAGACATGCTGGAAAACTGTCAAGTTGATTGAGATGAATGAACAAGGAGACAAGGAACCAACCTCAGAGAATGTTGATGAGAAAAACAGCTGGG
AATATCTCTTCAAGGATTACTGGATTGATCTGAAGACAAGCTTATCTATCACGTCAGATGAAGTTGTCATGGCAAAACATCCACGCAAAGGGTCTGATTC
AGTTGCTGCAAAGCAGGACTCTCTTGATGAATTGTACGAAGCTCCCAATGATGCAGGATCTGCATCAGATAGCTCTGCTGGCAATCCTGAATTAACTGCC
TCCAAGAAAAGAAAGGGAAAAAAACGGCTGAAAACTCGTGGTAAGGAAAGGGAATCAGCTGGTAAGAGGAAGTTAAATGGGGTTGGGGTATCCTCAGATA
ATGATGAGTGGGCATCGAAAGAGCTTCTAGAGTTTGTTATGCACATGAAGAACGGTGATAAATCTGTTTCTTCTCAGTTTGACGTACAAGCTCTTCTTTT
GGAGTATATAAAGAGGAATAAACTCCGCGATCCACGTCGGAAAAGTCAAATACTTTGTGATTCGAGGCTTCAACATCTGTTTGGAAAATCTCGAGTGGGC
CACTTTGAGATGTTAAAACTTCTCGAATCTCACTTTCTTTTGAAAGAGAACTCTCAGATGGATGCTGCTCGAGGAAATGTTGACGCTGAAGGCAATCAGG
TAGACGGTGATGGGATCTCTGATGTGAAAGCTGGCAAGGATAAGAAACGGAGGTCCCGTAAGAAGGGCCAGGGTCTGCAGTCTAATGTTGATGACTATGG
TGCCATTGACACACACAACATAACTTTAATTTACTTGAAGCGGAGTTTGGTGGAGGAACTTCTTCAGGACACAGATACATTTAATGATAAAGTTGTTGGT
TCTTTTGTGAGATTAAGGATATCTGGAAACACTCAAAAGCAAGATTTGTATAGGCTAGTCCAAATTATAGGCACCAAGACAGCTGATAATCCATATAGAG
GGGGAAAAAGGAATATTAATTTCCTGCTGGAAATATTGAATCTAAACAAGACCGAGGTCATTTCAATCGATGCCATTTCGAATCAAGAATTTACAGAGGA
TGAATGCAAGCGTTTGCGGCAAAGCATTAAGTGTCAGCTGCTCAATCCATTGACTGTGGGTGACATTCAGGAAAAGGCCATCGCTCTGCAGGGAGTTAGA
GTTCAAGATACGCTGGATGCAGAAATAACACGTCTCAGTCATCTTCGCGATCGAGCAAGTGACATGGGGAGGAGAAAGGAATATCCTTTATTTGCCAAAA
AGTTGCAGCTTCTGAAAACACCTGAGGAGCGCCAGCGGAGGCTAGGAGAAATTCCTGAAATTCACGTTGACCCAAAGATGGATCCGAGTCACGAGTCTGA
AGAAGAAGTAGATGAAACAGATAATAAGAGTAGAGATACATATTTGAGGCTGCGAGGCAGTGGCTTCAATAGGAGGGCAAGAGAGTCAATTTCGCCAAGG
AAAGGGGCAACGAGTCCAAACGAATCCTGGGGTCGAACACGAAGTTTCTCAAATACGAATCGAGAGTTGACCAGAAACTCGTCTGGCAAGGGGTTCTCTT
ACAGAGGGGATGACACAATTGGGTCTAGCGAAAAAGCGGATGAGAACTTATGGAGTCGGGGAAGAGACAGGGAGATTGAACCTTCCCGGAGTTGGGATAG
TCCAAAACGTGCTTCAAATGCAGAACCACAGAATTCGCATTCAGTGGTAACGCCGGAATTAGCTTCCAGGAGTGCACAAGAGATTTCTCCTGGACCTTCC
TCGACGGGTTTCGGTGACTCAGCTTCCAAAGCAAATGAAACACAGAAGATATGGCATTACAAAGACCCGGCTGGAAAAATTCAAGGACCCTTTTCAATGG
TACAGCTTCGAAAATGGAACAAATCTGGATACTTCCCTGCTAATTTGAGAATATGGAAAGCCACAGAGGACGAAGGGAACTATATACTTCTTACTGATGC
ATTAGATGGAAATTTCCAGACTCCATTGGTTCAGAGTCCAAAAGCATCGTCCTTTAAAGCCGGGATTGCGAGAGAAAATGATAGGCCTTCTGGAAGATCG
GTTCCCATTGCAGTCGAGGTCCCTAATAATTCTGCTGACAGATGGAATTCAGAAACGAGCCTCCCTTCCCCAACTCCATCCTCAGCTGGATCAAGGGTAC
GAGCTAGGGAAAGTAGATGGTCTCCAACACCTCCTCAAACTGCTGGTTCTCAGTTTGAAGTTAATCCATTCTCTGCTGCAAGTAATGACAGGAATACTCT
GTCCTCTAATAATGTAAGTTCTGCAATTGCTCCTCAGATGCATTCTCAATCAATGGCGCCGGTTACATCACCGGCGGTGCCGGTCAACTCCCATATGCTT
CGAATCCCCAATTCCAATGGCGCTGCAACTAATGCAGCGATGGATACAGTAGCTTTCCAGAGCTTGGTTCAGACTATCAGTAATAATCCTCTTCTGGTGT
CACAGGGAATGGGAGGAGTCGTTCCGGTTTCTAGGCCCGAAACAAACATGAGCGCTGCAAGTGGGACTCATCAAGCATGGGGAACTGCTTCTTCACTGCA
GCGGCCCGAGCTCAATAATAGTCAAATGCATGTGGCTCCTTTAAGTAATGCTTATGGGAACTGGGGAGCTCCTATGGCAGCTCAGTCAAACGTTCAACAT
TCTGGTCAGGCCGGGGCACAATGGGGAATGGGTGTTGCAGTTGTAGACAACAACCCGGTTTCTACCGCCAATTCGACCCAGGGATGGAGCGGAATCCCAG
GAAACCAAACCATGGTCTGGGGAGGAAACATGCCTGCAAATGCGAATCAGGGATGGGTACCACCACAAAATCAGGGAATGATTGCTGGAAACGCGAATGC
TGGTTGGATTCAGGGGCAGCAGGTAGTGAGCAACACAAATGCAGGGTGGTCTGCTCCAGCTGTTCATCAACAAGTTCAAGGTTGGGCACCGGCGCCCGTA
CCAACTTCTTCTACAAATCAGAACTCGGGAGGGTATATCAGTCATGGAAACGCAAACAACAACCCCGGTTGGAGTGTGGCAGCTCCTAGTGTAGGAGGGA
ACAACTGGGGGAACGAAAGGAACAATGGTGTCGGCGGGTCAGGCAATAGGGACAGAGGCACTCCTCAAGGAGGAGATTCTGGGTATGGAGGTGGACGAAG
CGGCGGGGATAGAGCATGGAATAGACAGTCTTCTTCTTCCTCGGGGAGAGGCGGAGGAGGAGATTTCGGATCGAGAGCGTATAATAGTAGAGGGCAAAAG
TGTGAAGCAAACAGAGAGGTGGTGGAGGAAGTAGGAATTTTGAGCACCGTTGGAAATGTGTGTACAGTGATTTCTAACTTGTATCAACATAGAATGGTGC
AGTGCAGCAGGAACCTCCGTAACCGAAGAATCGGTCAATACTCGATACAACGTGCCAAGCTGAACATTGAGGATAGGTAA
AA sequence
>Lus10042072 pacid=23153874 polypeptide=Lus10042072 locus=Lus10042072.g ID=Lus10042072.BGIv1.0 annot-version=v1.0
MDPEEDPDSIPSSEPSPPSQADTISPLPTATPIEQSPSAEPVSTSVDNAQGTPYELRGSELQPPVSNHESEAAEVVDEFEERVKDSERSHEELAGGSGGE
EESQSVADEAAASEMEMTVDELGDHAEGSEDVSLVVEESKEVAVRGEDSSAGVVVGEQESSGIVDNVGSLGKADVDVSGKEETPGETLVSQEVDEFSMVE
KVEQTEKKDEAEEEKQNALVVEETTKKDEVDNVENKDEVDEKQIELVEGVSMKDKEDGVEKKDEMEVGPVPEKDMNGENVDGSGNVEDDGGEKVDRACVD
DVTEEIQGSEQNETANVGRSIEEVDEMEVDDGIEEKDKGDERLDIKEEEGVKVSEAVEETENVDVAMDRDDESNESEVEYLKLKEVAEEDHKLTGAKEEA
FEMNEVEKDAEKVNEAVDGDEKLNESAGEGVKLNEVAEEDQKLTGANEEVVAMKEVEKEEENADVTIDGDAKLTEVEEEDLKLNEVAKEDAEASEANEEV
VKVEGAEEQNINELDEQDEEEEEEEEELNEAEEEDKEDTDEEMTEVAEEDDKMNEEEGGEEVEEGDDEKMNEAEDTEVAAEDNVEEVSQTSSGKRKRGKN
ANVIGKSPSKKKTEEDVCFICLDGGELVLCDRRGCPKAYHPSCVNHDDAFFQTKGKWYCGWHICSKCEKNANYMCLTCTFSLCKGCIKEDAIFCVRGNKG
FCETCWKTVKLIEMNEQGDKEPTSENVDEKNSWEYLFKDYWIDLKTSLSITSDEVVMAKHPRKGSDSVAAKQDSLDELYEAPNDAGSASDSSAGNPELTA
SKKRKGKKRLKTRGKERESAGKRKLNGVGVSSDNDEWASKELLEFVMHMKNGDKSVSSQFDVQALLLEYIKRNKLRDPRRKSQILCDSRLQHLFGKSRVG
HFEMLKLLESHFLLKENSQMDAARGNVDAEGNQVDGDGISDVKAGKDKKRRSRKKGQGLQSNVDDYGAIDTHNITLIYLKRSLVEELLQDTDTFNDKVVG
SFVRLRISGNTQKQDLYRLVQIIGTKTADNPYRGGKRNINFLLEILNLNKTEVISIDAISNQEFTEDECKRLRQSIKCQLLNPLTVGDIQEKAIALQGVR
VQDTLDAEITRLSHLRDRASDMGRRKEYPLFAKKLQLLKTPEERQRRLGEIPEIHVDPKMDPSHESEEEVDETDNKSRDTYLRLRGSGFNRRARESISPR
KGATSPNESWGRTRSFSNTNRELTRNSSGKGFSYRGDDTIGSSEKADENLWSRGRDREIEPSRSWDSPKRASNAEPQNSHSVVTPELASRSAQEISPGPS
STGFGDSASKANETQKIWHYKDPAGKIQGPFSMVQLRKWNKSGYFPANLRIWKATEDEGNYILLTDALDGNFQTPLVQSPKASSFKAGIARENDRPSGRS
VPIAVEVPNNSADRWNSETSLPSPTPSSAGSRVRARESRWSPTPPQTAGSQFEVNPFSAASNDRNTLSSNNVSSAIAPQMHSQSMAPVTSPAVPVNSHML
RIPNSNGAATNAAMDTVAFQSLVQTISNNPLLVSQGMGGVVPVSRPETNMSAASGTHQAWGTASSLQRPELNNSQMHVAPLSNAYGNWGAPMAAQSNVQH
SGQAGAQWGMGVAVVDNNPVSTANSTQGWSGIPGNQTMVWGGNMPANANQGWVPPQNQGMIAGNANAGWIQGQQVVSNTNAGWSAPAVHQQVQGWAPAPV
PTSSTNQNSGGYISHGNANNNPGWSVAAPSVGGNNWGNERNNGVGGSGNRDRGTPQGGDSGYGGGRSGGDRAWNRQSSSSSGRGGGGDFGSRAYNSRGQK
CEANREVVEEVGILSTVGNVCTVISNLYQHRMVQCSRNLRNRRIGQYSIQRAKLNIEDR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G16485 nucleic acid binding;zinc ion ... Lus10042072 0 1
AT2G16485 nucleic acid binding;zinc ion ... Lus10018078 1.0 0.9515
AT1G76820 eukaryotic translation initiat... Lus10012856 6.3 0.9270
AT1G61730 GeBP DNA-binding storekeeper protei... Lus10010076 6.9 0.8902
AT4G09980 EMB1691 EMBRYO DEFECTIVE 1691, Methylt... Lus10014971 8.1 0.9117
AT1G76810 eukaryotic translation initiat... Lus10030500 8.5 0.9183
AT3G53940 Mitochondrial substrate carrie... Lus10024344 8.8 0.8888
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Lus10035658 12.5 0.9069
AT5G19350 RNA-binding (RRM/RBD/RNP motif... Lus10031277 13.4 0.9093
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Lus10014562 19.6 0.9106
AT4G31200 SWAP (Suppressor-of-White-APri... Lus10016927 20.7 0.9089

Lus10042072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.