Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16460 252 / 4e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) AT3G51090 213 / 7e-68 Protein of unknown function (DUF1640) (.1) AT2G35090 47 / 2e-06 Protein of unknown function (DUF1640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018079 [exp] 545 / 0 AT2G16460 252 / 3e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10041812 [exp] 195 / 3e-61 AT2G16460 252 / 1e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10018078 [exp] 43 / 0.0003 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123700 [exp] 266 / 7e-90 AT2G16460 352 / 2e-124 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Potri.007G016300 [exp] 227 / 3e-74 AT2G16460 311 / 2e-108 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07798 [flax] [poplar] DUF1640 Protein of unknown function (DUF1640)
Representative CDS sequence Show only first row Show all	>Lus10042073 pacid=23153788 polypeptide=Lus10042073 locus=Lus10042073.g ID=Lus10042073.BGIv1.0 annot-version=v1.0 ATGGCTCTGTGTAAGCGGTTTGCTCAATCGGGAGCTCATCTTGTCAAATTTCGTCTCCTTGATGCCACTCATAAGAGCTCATCCTTCTCTGCTGCTCCTG GTGGTAAATTCCAGTACGGCAGGCACTTCTCCGAGCTTTCCGGACCTAACAGCGCTAACCGTGTGTGTCTTGTGGACACATTACAATTGGTGAGGAGATT GGAATCGCAAGGACTGCCATCGAAGCATGCAGAGGCGATAACCACGGCTTTGATTTCAGTTTTAAACGACAGCTTCGAGAGTCTATCGCATTCTTACGCT TCCAAAGAAGAAATGCAGAAGATTGGAATGATTCTAGACTCGAGCCTCTCAAAGTTCAAGGCTGAAGTACAGAGCGCCCAGGTAGCTCGGGAAATGATTC AGGAATCGAACTTCTCCAAGTTTCAGAATGAACATCTATCCAACTTCTCTAAGTTCCAGTCTGAGATACAAAGCTCCAAGGATCATCATTTTTCCATGTT GCAACGTGAAACTGAAAAGCAAAAGGCTGACACAGATAAAGTACATGAAAAGTTGCAGAGTGACATGAATAAAGTAGAAGAAAAGTTGCAGGGTGACATA GACAAAAAATATAGTGAACTGAGGTATGAAATTGACAAAGCAACCGCTGGCCAACGCTTGGATTTAAATCTCGAAAGAGGGCGGACACGGGACGAGCTGT CCAATCAAAAAGCGGAAACTAACAACTTGGCAAACAAGCTAGATCTGGAATCTAATGCAGTGCGAGCATTAATTGAAACAGCAAAGTATGACATAATCAA ATACTGCATCGGTACACTTGTGTCCATATCAGCTGTGGGGCTTGCAGTCCTCCGCATAATGCTTTAA
AA sequence Show only first row Show all	>Lus10042073 pacid=23153788 polypeptide=Lus10042073 locus=Lus10042073.g ID=Lus10042073.BGIv1.0 annot-version=v1.0 MALCKRFAQSGAHLVKFRLLDATHKSSSFSAAPGGKFQYGRHFSELSGPNSANRVCLVDTLQLVRRLESQGLPSKHAEAITTALISVLNDSFESLSHSYA SKEEMQKIGMILDSSLSKFKAEVQSAQVAREMIQESNFSKFQNEHLSNFSKFQSEIQSSKDHHFSMLQRETEKQKADTDKVHEKLQSDMNKVEEKLQGDI DKKYSELRYEIDKATAGQRLDLNLERGRTRDELSNQKAETNNLANKLDLESNAVRALIETAKYDIIKYCIGTLVSISAVGLAVLRIML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	0	1
AT3G04160			unknown protein		Lus10042519 [exp]	1.0	0.8006
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	5.0	0.7773
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	9.5	0.7927
					Lus10033536 [exp]	11.8	0.7506
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	12.4	0.7578
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	13.0	0.7682
AT2G39580			unknown protein		Lus10029459 [exp]	15.9	0.7292
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	16.1	0.7684
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	19.4	0.7943
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	20.4	0.7446

Compare expression of checked genes

Lus10042073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.