Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 603 / 0 MATE efflux family protein (.1.2) AT4G39030 529 / 0 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT3G08040 85 / 3e-17 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G38330 84 / 4e-17 MATE efflux family protein (.1) AT1G51340 74 / 8e-14 MATE efflux family protein (.1.2) AT4G38380 68 / 5e-12 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018080 [exp] 929 / 0 AT2G21340 667 / 0.0 MATE efflux family protein (.1.2) Lus10017964 [exp] 566 / 0 AT2G21340 622 / 0.0 MATE efflux family protein (.1.2) Lus10041955 [exp] 529 / 0 AT2G21340 598 / 0.0 MATE efflux family protein (.1.2) Lus10017498 [exp] 524 / 0 AT2G21340 610 / 0.0 MATE efflux family protein (.1.2) Lus10039609 [exp] 78 / 6e-15 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 78 / 7e-15 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10023943 [exp] 74 / 7e-14 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10016412 [exp] 73 / 2e-13 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10026829 [exp] 71 / 7e-13 AT4G38380 535 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122900 [exp] 643 / 0 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 602 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 75 / 4e-14 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.016G053600 [exp] 73 / 1e-13 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.005G102800 [exp] 73 / 2e-13 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.001G266900 [exp] 71 / 6e-13 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.004G183600 [exp] 69 / 5e-12 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 58 / 8e-09 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.009G053700 [exp] 57 / 2e-08 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042074 pacid=23153463 polypeptide=Lus10042074 locus=Lus10042074.g ID=Lus10042074.BGIv1.0 annot-version=v1.0 ATGCAGCTCTCAACTCTACACCAATCACTCCCCATTCCTCTTCCCAACCCTAGCTTCAGACGCTTCTACGGTTACCAATCCTCGGTCTTCTTTGCCAGGT CGTCGTCCCCTGTTTGTTTGCTCACTCCACGACGACTTCACGCCGCCGCCCCTTTCTCTCCTGAATTTCCATTTCTCAGGAGGAAGAGCGATGTGCCGCC GGGTAAGAATAACTGCATTGGCGAAAGTCAGGAGCAGGGGCGTCACGAGTGCACCATTGAGCTTGCGGCTTTAGGACCTGGGACGGTGTTGTGTGACTAT ATCTGTTATGTGTTCATGTTTCTCTCCGTTGCCACTTCGAATTTGGTTGCTACTGCCCTTGCCAGACAGGACAAATCAGAAGTGCAGCATCAAATATCTG TACTTCTGTTCGTTGCATTAGTGTGTGGGGTGTTTATGCTTTTCTTTACAAGATTCTGTGGTTCATGGGCACTAACTGCCTTTGCAGGACCGAAGAACAT TGATCTAATACCAGCAGCAAATACATATGTGCAGATTCGAGGCTTAGCATGGCCTGCTGTTCTTATTGGATGGGTTGCTCAAAGTGCTAGTCTTGGAATG AAAGATTCATGGGGCCCTTTGAAAGCTCTAGCAGTTTCTACTCTCGTAAATGGTGTCGGAGATGTAGTCCTGTGCAGTTTTCTAGGTTATGGTATAGCTG GGGCAGCATGGGCAACAATGGTGTCCCAGGTTGTTGCAGCCTTTATGATGATCAACTCACTGAACAAGAAAGGCTACAATGCAACTTCGATTTCTGTCCC AAAATTAGATGATCTTCTGAGGATACTTGGAATTGCTGCTCCAGTGTTTATTACAATGACATCAAAGGTGGCATTTTATTCGCTCATTATTTATTTTGCC ACAGCAATGGGTACGCATGTGGTGGCAGCTAATCAGGTCATGAGTCAAGTATTTGGCATGTGTGGTGTGTGGGGTGAACCTATCTCTCAAACTGCACAAT CATTTATGCCCGAGCTAATATATGGGGCCAAGAGAGATTTGTCAAAGGCACGTAAGCTGCTCAAATCCCTGGTTGTAATTGGAGCTGCACTTGGATTGAC CTCAGCAGCAATTGGCTCAGCTATTCCTTGGTTTTTCCCAAGAATCTTTACTCCTGACCCAAAAATAGTTCATGAGATACACGGAGTTCTGCTTCCATTC TTTATTGCATTGGCTGTGACCTCCTGCAATCACAGTCTAGAAGGAACATTGATGGCTGGAAGAGATCTTAAGTTCCTTAGCTTGTCAATGACCGGATGCT TCTCCTTGGGAGCTCTAATAGTGTTGGTCTCGAGCAGCAAAGGATTTGGGTTGCCAGGCTGCTGGTTTGCGCTTGTGGTATTCCAATGGTCTCGGTTCGC CCTTGCTCTGCAGAGACTCGTCTCTCCCAGCGGCATACTCTTCTCGGAGGACTTGAGTCGGTACAAAGAGAAGTTGAAAGCTACTTGA
AA sequence Show only first row Show all	>Lus10042074 pacid=23153463 polypeptide=Lus10042074 locus=Lus10042074.g ID=Lus10042074.BGIv1.0 annot-version=v1.0 MQLSTLHQSLPIPLPNPSFRRFYGYQSSVFFARSSSPVCLLTPRRLHAAAPFSPEFPFLRRKSDVPPGKNNCIGESQEQGRHECTIELAALGPGTVLCDY ICYVFMFLSVATSNLVATALARQDKSEVQHQISVLLFVALVCGVFMLFFTRFCGSWALTAFAGPKNIDLIPAANTYVQIRGLAWPAVLIGWVAQSASLGM KDSWGPLKALAVSTLVNGVGDVVLCSFLGYGIAGAAWATMVSQVVAAFMMINSLNKKGYNATSISVPKLDDLLRILGIAAPVFITMTSKVAFYSLIIYFA TAMGTHVVAANQVMSQVFGMCGVWGEPISQTAQSFMPELIYGAKRDLSKARKLLKSLVVIGAALGLTSAAIGSAIPWFFPRIFTPDPKIVHEIHGVLLPF FIALAVTSCNHSLEGTLMAGRDLKFLSLSMTGCFSLGALIVLVSSSKGFGLPGCWFALVVFQWSRFALALQRLVSPSGILFSEDLSRYKEKLKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	1.0	0.9024
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	2.6	0.7770
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	4.5	0.8181
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	4.9	0.7865
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	5.2	0.8126
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	5.3	0.8006
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	6.9	0.7744
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	7.7	0.7534
AT5G13030			unknown protein		Lus10031224 [exp]	10.8	0.7644
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	11.0	0.7206

Compare expression of checked genes

Lus10042074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.