Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24760 466 / 5e-165 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 441 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 440 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 364 / 8e-125 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 347 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 322 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 298 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 300 / 1e-99 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 282 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 261 / 7e-84 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018081 [exp] 688 / 0 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022307 [exp] 475 / 4e-168 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000544 [exp] 418 / 6e-146 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 385 / 7e-133 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 379 / 2e-130 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033575 [exp] 329 / 3e-111 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 322 / 2e-108 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10036842 [exp] 310 / 3e-103 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028497 [exp] 298 / 2e-99 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090800 [exp] 535 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 534 / 0 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 504 / 1e-179 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 390 / 6e-135 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 384 / 1e-132 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 379 / 3e-130 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 365 / 9e-125 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 357 / 3e-122 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 352 / 2e-120 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 286 / 2e-95 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10042075 pacid=23153991 polypeptide=Lus10042075 locus=Lus10042075.g ID=Lus10042075.BGIv1.0 annot-version=v1.0 ATGGGAGGGGTGACATCGTCCATGGCTGCCAAATTCGCTTTCTTCCCTCCAACCCCACCTTCCTACAAGCTAATTACCGACGATGCCACTGGTCTCCTCC TTCTCCACCAGTTCCCCCACCGCGAGAACGTCGACGTCCTCCGCCTCACTACTCGCCGCGGAAATGAGATCGCCGCCGTCTACGTCCGCTACCCTATGGC CACCACCACGCTCCTCTACTCCCACGGGAATGCCGCCGATATCGGCCAGATGTATGATTACTCTGGCTATGGACACTCAACAGGAAAGCCAAGTGAGCAT AATACATATGCAGATGTTGAAGCTGCTTATAAGTGTCTTGAAGAGAACTATGGTGCCAGGCAGGAAAACATCATTCTCTATGGTCAATCTGTTGGGAGTG GGCCTACTCTTGATCTCGCGGCACGTTTACCTCGACTAAGAGCTGTTGTCCTGCACAGTCCTATACTGTCAGGCTTAAGGGTCATGTATCCGGTGAAGCG TTCATATTGGTTCGACATCTACAAGAATATTGACAAGATTCCACAGGTGAAGTGCCCTGTACTTGTTATCCATGGAACTTCAGATGAAGTAGTTGATTTT TCTCACGGGAAGCAGCTCTGGGAACTCTGCCAAGAGAAATACGAACCTCTATGGCTAAAAGGAGGAAACCACTGCGACCTAGAGTTATATCCAGAATACC TCAGACATCTAAAGAAATTCATCATAACAGTAGAGAAATCACCCTCACGGAGAAGCAGTGCCAGGAAAAGCACAGACTGTATGGAACAATCCAGGAAGAG CACGGATCGGTACGAGGCAGCTAGGAAGAGCACCGATCGTTACGAAGTCGCAAGGAAGAGCATCGATCGTTACGAGGTGGCAAGGAAGAGCACAGACAGA AGGGAGAAACCCAGGAAAAGCACAGACAGAGGCGAAAAACTGAAATTCCACGAGTTCAAGTTCAGCAACGTTGAGAAAGTGGACAAGTTAAAGATCCCAT TTGATCAGATGGAAAGGTCTAGGAGAAGTGTGGAGTACTATGAGAAACCAAGGAGGAGCATTGATCATCAGCAAGAGAAAGGGAGGAAGAGTGTAGATTG GCTGGATAGGATCAGAGCTGGATAA
AA sequence Show only first row Show all	>Lus10042075 pacid=23153991 polypeptide=Lus10042075 locus=Lus10042075.g ID=Lus10042075.BGIv1.0 annot-version=v1.0 MGGVTSSMAAKFAFFPPTPPSYKLITDDATGLLLLHQFPHRENVDVLRLTTRRGNEIAAVYVRYPMATTTLLYSHGNAADIGQMYDYSGYGHSTGKPSEH NTYADVEAAYKCLEENYGARQENIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRSYWFDIYKNIDKIPQVKCPVLVIHGTSDEVVDF SHGKQLWELCQEKYEPLWLKGGNHCDLELYPEYLRHLKKFIITVEKSPSRRSSARKSTDCMEQSRKSTDRYEAARKSTDRYEVARKSIDRYEVARKSTDR REKPRKSTDRGEKLKFHEFKFSNVEKVDKLKIPFDQMERSRRSVEYYEKPRRSIDHQQEKGRKSVDWLDRIRAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24760			alpha/beta-Hydrolases superfam...		Lus10042075 [exp]	0	1
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10013153 [exp]	1.4	0.8126
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	4.2	0.7709
AT5G62270			unknown protein		Lus10021682 [exp]	18.4	0.7993
AT5G53800			unknown protein		Lus10003591 [exp]	24.4	0.8103
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	27.9	0.8003
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013822 [exp]	29.8	0.7454
AT4G20150			unknown protein		Lus10038391 [exp]	30.2	0.7636
AT5G53900			Serine/threonine-protein kinas...		Lus10005549 [exp]	42.0	0.7639
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	46.5	0.7607
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027410 [exp]	55.9	0.7461

Compare expression of checked genes

Lus10042075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.