Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50230 711 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 107 / 2e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 105 / 9e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 90 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 87 / 1e-18 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 87 / 2e-18 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G10580 87 / 9e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 82 / 3e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT1G18080 80 / 3e-16 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 79 / 6e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018081 [exp] 948 / 0 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10015925 [exp] 465 / 6e-161 AT5G50230 379 / 1e-127 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 105 / 2e-24 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 104 / 2e-24 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 100 / 5e-23 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 100 / 6e-23 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 100 / 8e-23 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 99 / 1e-22 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 85 / 4e-17 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087200 [exp] 801 / 0 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 114 / 1e-27 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 109 / 2e-26 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 93 / 1e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 89 / 2e-18 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 85 / 4e-17 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 82 / 4e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 84 / 6e-17 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.012G052700 [exp] 78 / 2e-15 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 79 / 5e-15 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08614 [flax] [poplar] ATG16 Autophagy protein 16 (ATG16)
Representative CDS sequence Show only first row Show all	>Lus10042076 pacid=23153670 polypeptide=Lus10042076 locus=Lus10042076.g ID=Lus10042076.BGIv1.0 annot-version=v1.0 ATGGTTACTGATTGTGATCGTGGCGGCTGTTTCAGGTCGCTGGATCAGATCTCGAGGAAAGCTATTAAACACGCGATGAAGGCTCTGAGAAAGCGGCATT TGCTTGAAGAAGCCGCACATGCTCCTTCTTATGCCGCTCTTTCCAGGCCATTTGTCTCTCAGGCGACTTTAGCTGTGGTGTGGTATTTTTTTTATGAGGT TCAGGGCTCAGAATGGAAGGAGAAAGCAGAGAACTTGGAGTCTGAGCTTCAGCAATGCTACAAAGCTCAATCTCGGTTGTCTGAGCAACTTGTGGTTGAA GTAGCAGAGGCCAGAGCAGCAAAAGCTTCACTTCAAGAGAAAGAAGCAACTATTGCCGATCTGCAGAAGGAACTAACTGAATTAAGGGATGAATGCTCCC AACTGAAGGATGACTTGGTAGAGAAGATCAAAGGATTGGAACTCATAGTGAGTGAAAATCAAGAGCTGAGACACCAATTGACAGAGATGACCACCAAGGC TAAGGATGCTGAGGCCGAGAACAAGATGCTGGTTGATCGCTGGATGTTGCAAAAGATGCAAGACGCTGAGCGCCTCAATGAGGTGAATGCACTTTATGAA GAGATGGCTGATCGGCTAAAGGCAAGTGGCCTAGAGAAACTTGCTCGGCAACAGGTGGACGGAGTGGTTCGTCGAAGTGAGGAAGGTGCCGAGTATTTCG TCGAATCCACCATCCATTCTTCGTGCAAACACAAGATCACAGCTCATAACGATGGCTGCGGTTCTATATTATTCGAATTCAACTCAACAAAACTAGTTTC CGGCGGACACGACAAGTCAATCAAGATGTGGGATACAAACACAGGAGCACTAACTCGAACGCTACAAGGCTGCCTCGGATCCGTTCTCGATCTTTCCATC ACACACGACAATAAATCAGTGATTGCAGCTAGCAGCTCCAACAACCTATTTGTTTGGGACGTAACCTCGGGTCGCCAACGTCACACTTTGACAGGCCACG TGGACAAAGTCTGTGCCGTGGACGTCAGCAAAGTCTCGAGCCGCCATGTCGTAAGCTCTGCTTATGACCGTACGATCAAAGTGTGGGATCTGCAGAAAGG CTACTGCACGAACACGATCATGTTCCCCAGCAACTGCAACGCTGTTTGCTTCGGAATGGACGGACAGACGATTTGCTCAGGCCACGTCGACGGGAATCTC CGGCTTTGGGACATTCAGACGGGGAAGCTTCTCAGTGAAGTGGCTGCTCATTCTCTTGCAATTACGTCTTTGTCCTTGTCGCGCAATGGAAGCACTATAC TAACCAGCGGGAGAGACAACCTTCACAATATCTTTGACATGCGGTCGCTCGAAGTTTGTACCATGCTGAGAGCTAGTGGGAACCGGATCGCGACGAATTG GAGCCGGTCTTGTCTGAGCCCTGACGACAAGTATGTTGCTGCTGGTTCGGCGGATGGTTCAGTGTACATTTGGTCGGTGGCCAAAGGTGATATAGTGAGC ACCCTTAAGGAAGATACGAGTGCAGTTCTGTGCTGTTCGTGGAGTGGGCTTGGGAAGCCGTTGGCCTCTGCGCATAAAAGTGGAGTCGTTTGCATCTGGA AATGA
AA sequence Show only first row Show all	>Lus10042076 pacid=23153670 polypeptide=Lus10042076 locus=Lus10042076.g ID=Lus10042076.BGIv1.0 annot-version=v1.0 MVTDCDRGGCFRSLDQISRKAIKHAMKALRKRHLLEEAAHAPSYAALSRPFVSQATLAVVWYFFYEVQGSEWKEKAENLESELQQCYKAQSRLSEQLVVE VAEARAAKASLQEKEATIADLQKELTELRDECSQLKDDLVEKIKGLELIVSENQELRHQLTEMTTKAKDAEAENKMLVDRWMLQKMQDAERLNEVNALYE EMADRLKASGLEKLARQQVDGVVRRSEEGAEYFVESTIHSSCKHKITAHNDGCGSILFEFNSTKLVSGGHDKSIKMWDTNTGALTRTLQGCLGSVLDLSI THDNKSVIAASSSNNLFVWDVTSGRQRHTLTGHVDKVCAVDVSKVSSRHVVSSAYDRTIKVWDLQKGYCTNTIMFPSNCNAVCFGMDGQTICSGHVDGNL RLWDIQTGKLLSEVAAHSLAITSLSLSRNGSTILTSGRDNLHNIFDMRSLEVCTMLRASGNRIATNWSRSCLSPDDKYVAAGSADGSVYIWSVAKGDIVS TLKEDTSAVLCCSWSGLGKPLASAHKSGVVCIWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50230			Transducin/WD40 repeat-like su...		Lus10042076 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	26.8	0.6296
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	38.7	0.5929
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10027323 [exp]	54.3	0.5549
AT1G15780			unknown protein		Lus10025452 [exp]	62.8	0.5722
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	85.5	0.5282
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	124.4	0.5137
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	130.6	0.5160
AT3G50120			Plant protein of unknown funct...		Lus10017132 [exp]	169.4	0.4892

Compare expression of checked genes

Lus10042076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.