Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 529 / 0 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 494 / 2e-176 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G48350 474 / 2e-168 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G35350 369 / 3e-127 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 365 / 2e-125 XCP2 xylem cysteine peptidase 2 (.1) AT3G19390 348 / 2e-117 Granulin repeat cysteine protease family protein (.1) AT5G45890 342 / 1e-116 SAG12 senescence-associated gene 12 (.1) AT1G47128 345 / 5e-116 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 341 / 1e-114 Granulin repeat cysteine protease family protein (.1) AT4G36880 337 / 2e-114 CP1 cysteine proteinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018083 [exp] 721 / 0 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10013674 [exp] 624 / 0 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10033040 [exp] 613 / 0 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 372 / 3e-128 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 371 / 5e-128 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 370 / 2e-127 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 369 / 2e-127 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10032406 [exp] 367 / 2e-126 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 367 / 2e-126 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087400 [exp] 576 / 0 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 568 / 0 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 559 / 0 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.008G183100 [exp] 481 / 4e-171 AT5G50260 489 / 2e-174 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.013G118200 [exp] 374 / 6e-130 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 372 / 2e-128 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 371 / 4e-128 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 369 / 5e-127 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.001G302100 [exp] 370 / 1e-125 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.005G089100 [exp] 364 / 1e-125 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10042078 pacid=23153777 polypeptide=Lus10042078 locus=Lus10042078.g ID=Lus10042078.BGIv1.0 annot-version=v1.0 ATGGGAGGAGTGATCAAAAAGTCTCTGCTCGTCGCCCTGTCCTTGGCTCTACTCCTAGGCCTTGCAAACTGCTTCGATTTCCACGAGCACGAGCTGGCAT CTGAGGACAGCCTACGGGAGTTGTATGAGAGGTGGAGGAGCCACCACACGGTGTCGAGGAGCCTCGACGAGAAGCGCAGGAGGTTTAACGTGTTTGCGGA CAATGTGATGCATGTTCATGAAACCAACAAGATGGACAAGCCTTACAAGCTGAAGCTGAACAAGTTTGCTGACATGACTACACATGAGTTCAAGAGTCTT TATGCGAACTCCAAGGTCAGCCACCACGCCATGTTCCGTGGGGCCCCACGAGGCAGCAACGGGACGTTCATGTATCAAAACGTCCCGAGAGTCCCGCCTT CCGTCGATTGGAGGCAGAAGGGTGCTGTTACCCCAGTTAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCGACGGTGGTGGCAGTAGAAGGGAT CAACTACTTGAAAACAAACAAGTTAGTGTCTTTGTCTGAGCAAGAATTGGTGGATTGCGACACTACCGAAAATCAAGGATGCAATGGTGGGTTGATGGAG TATGCATTCGAGTTTATCAAGCAAACCGGTGGCATTGCAACTGAGGATGCTTATCCTTATCAGGCTGAAGATGGAACCTGTGATTCTGTCAAGGAGGATG CACCAGCTGTATCGATTGATGGACATGAGAATGTACCCAAGAATGACGAGGACGCACTGCTCAAAGCTGTTGCAAACCAGCCAGTATCAGTGGCCAATGA TGCTGGTAGCAGAGATTTCCAGTTCTACTCAGAGGGTGTGTTCACCGGAAGCTGCGGAACAGAGCTGAACCACGGAGTAGCAGCAGTAGGGTACGGAATC ACAGTCGACGGAACCAAGTACTGGATCGTGAAGAACTCGTGGGGAGCCGAATGGGGAGAGAAAGGATTCATCAGAATGCAGAGAGGCGTCTCGGACAAAC AAGGGCTATGTGGTATTGCAATGGAGGCTTCATATCCTACCAAAACTTCATCCGCTAACCCAACCACCCTCTCGTACTCTCCCAAAGACGAGCTCTGA
AA sequence Show only first row Show all	>Lus10042078 pacid=23153777 polypeptide=Lus10042078 locus=Lus10042078.g ID=Lus10042078.BGIv1.0 annot-version=v1.0 MGGVIKKSLLVALSLALLLGLANCFDFHEHELASEDSLRELYERWRSHHTVSRSLDEKRRRFNVFADNVMHVHETNKMDKPYKLKLNKFADMTTHEFKSL YANSKVSHHAMFRGAPRGSNGTFMYQNVPRVPPSVDWRQKGAVTPVKDQGQCGSCWAFSTVVAVEGINYLKTNKLVSLSEQELVDCDTTENQGCNGGLME YAFEFIKQTGGIATEDAYPYQAEDGTCDSVKEDAPAVSIDGHENVPKNDEDALLKAVANQPVSVANDAGSRDFQFYSEGVFTGSCGTELNHGVAAVGYGI TVDGTKYWIVKNSWGAEWGEKGFIRMQRGVSDKQGLCGIAMEASYPTKTSSANPTTLSYSPKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	0	1
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	1.0	0.9693
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	1.4	0.9661
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	1.7	0.9650
AT2G14095			unknown protein		Lus10035649 [exp]	3.5	0.9553
AT2G01300			unknown protein		Lus10004062 [exp]	3.7	0.9449
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	4.5	0.9535
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	4.7	0.9350
AT3G61930			unknown protein		Lus10030203 [exp]	4.9	0.9439
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	6.5	0.9486
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	7.3	0.9432

Compare expression of checked genes

Lus10042078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.