Plant FIBer expression Database

Lus10042079 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10710 87 / 1e-20 PHS1 poor homologous synapsis 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018084
[exp]
291 / 3e-101 AT1G10710 88 / 3e-20 poor homologous synapsis 1 (.1.2)
Lus10004624
[exp]
73 / 1e-15 AT1G10710 170 / 4e-50 poor homologous synapsis 1 (.1.2)
Lus10026691
[exp]
68 / 2e-14 AT1G10710 133 / 4e-38 poor homologous synapsis 1 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044800
[exp]
93 / 7e-23 AT1G10710 201 / 2e-62 poor homologous synapsis 1 (.1.2)
PFAM info
Representative CDS sequence
>Lus10042079 pacid=23153724 polypeptide=Lus10042079 locus=Lus10042079.g ID=Lus10042079.BGIv1.0 annot-version=v1.0
ATGGCGGGAATCAGTGAGCTGCCTCTTCTAAACCCTAACAATGGCACGAACAACACAGCTCAGACTCAGTGGTTGATACACTACGCTCGCTTCTTCAACC
TCCCTGCTCTCCAACCGACCTGCCCCGGTCTCGTTCCTCTGAGCTCCAGGTGGCGGAACAACAGTTCTTCCGGAACATGGCTCCCTTCTTCGTCCATGGT
GTCTCTGCAACTCCTTAGGCAACCGATTGACGCCGATGGTTTCCGCCTCGTCCTCCTCGTCTATTCTCAGGACAAAATCTACGAAGAACACTATATCTCG
AAGCTGCATTTCGCTTGGCCTCAGATTTCGTGTCTGGAAGCAACTTCTCTTAGAGGCAGCAGAGCTGTATTTGCAAGTTATGGAGATGGTCTAGGCCAGG
CAAGCTTTCTAACCTCTACAAGCTTGAATGGCATTGGAAATATAGGGATTGAAAGTGGCAGGTTTGTATCAGAACTCCCATCTACATCTCAGTTCATCTC
TCCAAATGGATCAGGTTACAGGTGA
AA sequence
>Lus10042079 pacid=23153724 polypeptide=Lus10042079 locus=Lus10042079.g ID=Lus10042079.BGIv1.0 annot-version=v1.0
MAGISELPLLNPNNGTNNTAQTQWLIHYARFFNLPALQPTCPGLVPLSSRWRNNSSSGTWLPSSSMVSLQLLRQPIDADGFRLVLLVYSQDKIYEEHYIS
KLHFAWPQISCLEATSLRGSRAVFASYGDGLGQASFLTSTSLNGIGNIGIESGRFVSELPSTSQFISPNGSGYR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10710 PHS1 poor homologous synapsis 1 (.1... Lus10042079
[exp]
0 1
AT4G31805 WRKY family transcription fact... Lus10024451
[exp]
7.2 0.7897
AT4G02210 unknown protein Lus10027531
[exp]
7.5 0.7537
AT1G79440 ENF1, SSADH1, A... SUCCINIC SEMIALDEHYDE DEHYDROG... Lus10002132
[exp]
9.3 0.6914
Lus10031413
[exp]
15.3 0.6936
Lus10020204
[exp]
16.9 0.6497
AT5G41410 HD BEL1 BELL 1, POX (plant homeobox) f... Lus10024661
[exp]
18.6 0.7549
Lus10015577
[exp]
24.3 0.6678
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Lus10025719
[exp]
26.3 0.7471
AT1G62340 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMA... Lus10015559
[exp]
27.5 0.7320
AT3G53180 NodGS nodulin/glutamine synthase-lik... Lus10023908
[exp]
42.5 0.7387

Lus10042079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.