Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50280 647 / 0 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 180 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 169 / 5e-43 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 166 / 2e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 166 / 4e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63080 164 / 6e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 164 / 2e-41 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G61990 164 / 8e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G41720 161 / 1e-40 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63130 158 / 7e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018086 [exp] 647 / 0 AT5G50280 337 / 1e-110 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 240 / 5e-65 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10014245 [exp] 177 / 2e-46 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10018318 [exp] 178 / 1e-45 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018075 [exp] 176 / 3e-45 AT2G41720 1020 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042068 [exp] 175 / 9e-45 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10012037 [exp] 167 / 7e-43 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017134 [exp] 167 / 9e-43 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003427 [exp] 161 / 1e-42 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091800 [exp] 691 / 0 AT5G50280 845 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 179 / 3e-47 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 179 / 8e-47 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 181 / 2e-46 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 179 / 9e-46 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 175 / 1e-45 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G368700 [exp] 176 / 1e-44 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 174 / 2e-44 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 171 / 2e-43 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 166 / 9e-43 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042081 pacid=23153726 polypeptide=Lus10042081 locus=Lus10042081.g ID=Lus10042081.BGIv1.0 annot-version=v1.0 ATGGCTGCCGTTGCTTCTACATTTCCCCGGCAAACGATTCCCTCTTCTTCGTTGCTCCTCCACTCTAATCTCTCCAATCCCAAACCTCCCAAGCTCCAAT TTCACAAACCCCGGCGGCCTCCTTTGTCTTTCTTCTGTGCACTTCCGCCTTCCACTTCCCACTCTCCTCTTCCAAACTTCTTTTCCCTCAAAAACGAAGA AGAAGAAGAAGAAGCAACTGAATCTTATAGCGGTGATGCTGACCAGCGGGAGGACGACGATGACGACCTGGAACTTTCCCAGTGGCGTTTCGCCTTGGAA TTCCACTCCAACGATGACAGCCACCCGCAGGTTGGCAGTAATAGTACCGATTCGAATCTTCTACCAGAGGGAATCGTCGGGGAAATACTGCAAATCGTTA CGAATCTTCGGGTGAAGGACGAATTGAGCCGGTACGACGGACAAATCAATGCCAAACAGTGCGAAGAAGTCCTTGAGATCGTGGCCAAAGAAGAGAAGAA TGAGGATTTGGTGATGGGTTGCTTGTATTTCTATGAATGGATGAGTTCTCAAGAGCCATTTCTTGTCACGCCTCGAGCTTCTACGATACTCTTCCTCTTG CTTGGGGGAGCTAGGATGTGCGATGAATTGTTGATTCTCTTTAACAGCTTGCCTCGGATCAAAGGATTCAGAGACGTCCGTGTTTACAATGCTGCCATGT ATGCCTTTCTCTGCTGCCGCAGGTATGATGATGCTTGCAAGGTGTTTGAAACCATGGAAGAAATTCATATCCGTCCTGATCACCTCACTTGCTGTATGAT GATCACGACAAAGAGAAAAAAAGGCCGTAGTTCGAAGGAAGCGTGGGAGTTCTTCCAGAGGATGAACAGGAAAGGAGTGAAATGGAGTTCACAAGTTCTC GCCGCTTTAATCAGATCGTTCTGTAACGAGAATCTAAAGGAGGAAGCGCTCGTTATCCTATCGAAAATGGAGAAGGAAGGAGTTTCCCCCAATGTGATCG TGTACAACGTGTTGATGAACGCTTATGTTAAATCGAACCAAGTCGAAGAAGCCGAAGGTCTGTTTGCTGAGATGAAACAACTTGGTATTAAACCGACATC AACAAGTTATATCATCCTTATGGATGCATACAGCCGAAGAATGCAGCCCGAGATTGTCCAGACCTTGCTTAAAGAGATGCAGGACGAAGGTTTCGAACCG GAAGTGAAATCGTACACGTGCCTGATTAGCGCGTACGGGAGGCAAAAGAAGATCGACATGGCTTCCGATGCATTTTCACGAATGAAGAGAGTCGGTATCA AACCTAATTCAAACTCTTACACAGCTCTTATCCATGCCTATTCGGTTTCCGGCCTCCATGAGAGAGCTTATCAAGTATTTGAAGAAATGCAGCAGCTTGA AGGAGTTAAACCTAGTGTAGAGACTTACAAAGCTTTGCTAAATGCATTCAGACGATCCGGTGACACCGAAACATTGATGAGAATCTGGAACCAGATGAGG ATTGATGATAAAGTCCAAGGGGAGATTGTGACGTTCAACATAATTCTCGATTGTTTTGCGAAACGGGGATGCTACTCCGAAGCAGTGGAAGTCGTTCGAG AATTCGGAAAGCTTGGATTCCAGCCTACTGTGATGACGTACAACATGCTGATGAATGCATATGCGAAAGGAGGGCAGCACACGAAGCTACCGCAACTGTT GAAAGACATGTCGGTTTTGAATCTGAAGCCCGACTCGGTTACCTACCTGACCATGATACATGCGTATGTTCGGGTTGGTGATTTCAAGAGAGCTTTCTTC TACCACAAGCAAATGGTGAAGAGTCGGCAGCTGCCTGATGCGAGTTCGTATGAGAAGCTTAAGAAAGCGTTGGTTATGAAAGCTGGGATGAAGAATAGGG AGGATCGGAGCGCTATACTCGCTCAAGCTATGGCGGATGCGGTTGCTACATTTCTCCGCCAACCTCCTCACTCTTCTTCTCTTCCTTTATCCCGCGCTAG TTCACGGAATCCGAAATCTCACATTTCGATTCCCGCCAAGCCACTGCGGCCTCATTCTTCTACTCCTCCAATCTCCCTCCAGAGCGACCCCCGCACGCAG CGCCGCCGTCTGTCCCCGGACTTCCACTCCGACGATGATTTCGCCGGTTCAAATCCTTCACACGACGGAATTGCGCTGAGGAAGCAATTGGATGAGTACC AGGGGAATATCACCGCGGAACAGTGCGAGCAGGTGCTGGAGATCCTGGCCAAAGAGGAGCAAGAGGAGGATAAGGTCCTCGGCGTGGCGATGAGTTGCCT GTACTTCTATGAATGGATGATTTCGCAGGATCCGCCTGTTATCACGCCTCGAGCTCCCACTGTTCTCTTCCCCTTACTCGGCAAGGCCGGATTGGGTGAT GAACTGATGTCTCTCTTCCGAAAATTGCCTCGGAACGATGAATTCAGAGACGTCCATGTCTACAATGCTGCTATGTCCGGCTTTCTCTACTGCGGCAGGT ATGACGATGCACGCAAGGTATACGAGAAAATGCCAGAAACCGATATCCATCCTAGTCACGTCACTTGTTCGATAATGATGTCTGTAATGAAAAAGCAAGG CCGTTTCCAGAAGGAAGCGTCGGATTTCTTTCGGACGACGTTCAGGAATGGAGTCGTATGGAATTCCGGAAGCCTCATCGGCTTAATCAAATCGCTCTGC GATGCCGGTCTGAAGGAGCAAGCCGCAAGGATCCTATCCGAAATTGTGAAGGAAGGAGGAGTTGCTCCCCACGTGGTTGTGTACGACGTGTTAATCAAAG CTTATTTCAACTCCAACCGAGCTGGAAAAGCCGAAGCTCTGTTCGCCGAGATGAAGGCACTAGGCGTTGAGCCAACGACTGCAACTTACAACTTGCTTAT GAATGCATACAGCGTAAGGATGCAGCCCGAAATGGTTGAGAAGCTGCTTAAAGAGATGCAGGATCGAGGTTTGAAACCGAATCCTAAATCATTTACGTCG TTAATTCGTGCATATGGGAGCCGGAAGAAGTGCGAATTGGCTGCGGATGCACTCTTGAGAATGAAGAGACTAGGCGTTGAACCTCATGCGCAAAATTACT GTGCTCTCATCCATGCTTATTCAGCCAGCGGGCAGTATGAGCAGGCTTGTGCAGTGTTTGAAGATATGCAGCTTGAAGGAGTAATCCCTAGTTCGGATAC TTACACAGCGTTGCTGGATGCGATCAGGCATGCCGGTGACACTGATAAGTTGATGAAGATATGGAAACAGATGAGGAAGGGGAATCATCCGCGGTCGAAG GGGATATTGAACATTGTTCTTGATGGTTTTGCTAAACAGGGTGATTACTTGGGAGCAAGAGCGGTGGTTGATGAATTCGGGAAGCAGGTTGGACTCGGGC CTACTGTGTCGACCTATAATAAGCTGATGGATGCGTATGCACGGGGAGGGAAGCACTCGGAGTTTCCTCGAGTGTTGGAGGAAATGTCGGATCTTGGTCT GAAGCCTGACTCGGTTACTTACCAGACCATGATAGATGCATACGCTGGTGTAGGTGATTATAAGAGTGCTTCCTTCTATTTGGATCGAATGGTGGAGAGT GGACAGCTGCCTGTATATCAAAAGTCGTATGAAGAGGGAGAATTGAAGTGA
AA sequence Show only first row Show all	>Lus10042081 pacid=23153726 polypeptide=Lus10042081 locus=Lus10042081.g ID=Lus10042081.BGIv1.0 annot-version=v1.0 MAAVASTFPRQTIPSSSLLLHSNLSNPKPPKLQFHKPRRPPLSFFCALPPSTSHSPLPNFFSLKNEEEEEEATESYSGDADQREDDDDDLELSQWRFALE FHSNDDSHPQVGSNSTDSNLLPEGIVGEILQIVTNLRVKDELSRYDGQINAKQCEEVLEIVAKEEKNEDLVMGCLYFYEWMSSQEPFLVTPRASTILFLL LGGARMCDELLILFNSLPRIKGFRDVRVYNAAMYAFLCCRRYDDACKVFETMEEIHIRPDHLTCCMMITTKRKKGRSSKEAWEFFQRMNRKGVKWSSQVL AALIRSFCNENLKEEALVILSKMEKEGVSPNVIVYNVLMNAYVKSNQVEEAEGLFAEMKQLGIKPTSTSYIILMDAYSRRMQPEIVQTLLKEMQDEGFEP EVKSYTCLISAYGRQKKIDMASDAFSRMKRVGIKPNSNSYTALIHAYSVSGLHERAYQVFEEMQQLEGVKPSVETYKALLNAFRRSGDTETLMRIWNQMR IDDKVQGEIVTFNIILDCFAKRGCYSEAVEVVREFGKLGFQPTVMTYNMLMNAYAKGGQHTKLPQLLKDMSVLNLKPDSVTYLTMIHAYVRVGDFKRAFF YHKQMVKSRQLPDASSYEKLKKALVMKAGMKNREDRSAILAQAMADAVATFLRQPPHSSSLPLSRASSRNPKSHISIPAKPLRPHSSTPPISLQSDPRTQ RRRLSPDFHSDDDFAGSNPSHDGIALRKQLDEYQGNITAEQCEQVLEILAKEEQEEDKVLGVAMSCLYFYEWMISQDPPVITPRAPTVLFPLLGKAGLGD ELMSLFRKLPRNDEFRDVHVYNAAMSGFLYCGRYDDARKVYEKMPETDIHPSHVTCSIMMSVMKKQGRFQKEASDFFRTTFRNGVVWNSGSLIGLIKSLC DAGLKEQAARILSEIVKEGGVAPHVVVYDVLIKAYFNSNRAGKAEALFAEMKALGVEPTTATYNLLMNAYSVRMQPEMVEKLLKEMQDRGLKPNPKSFTS LIRAYGSRKKCELAADALLRMKRLGVEPHAQNYCALIHAYSASGQYEQACAVFEDMQLEGVIPSSDTYTALLDAIRHAGDTDKLMKIWKQMRKGNHPRSK GILNIVLDGFAKQGDYLGARAVVDEFGKQVGLGPTVSTYNKLMDAYARGGKHSEFPRVLEEMSDLGLKPDSVTYQTMIDAYAGVGDYKSASFYLDRMVES GQLPVYQKSYEEGELK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	0	1
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	2.0	0.9032
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	5.7	0.8924
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	5.7	0.8983
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	5.7	0.8748
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	9.2	0.8672
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	9.8	0.8887
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	9.9	0.8684
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	11.5	0.8606
AT5G24650			Mitochondrial import inner mem...		Lus10032913 [exp]	11.9	0.7938
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	14.3	0.8438

Compare expression of checked genes

Lus10042081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.